clump in plink2

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Farnoosh

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Jul 5, 2024, 9:50:24 AM (11 days ago) Jul 5
to plink2-users
Hi, 

I am trying to run this command in plink2:

module load plink2

plink2 --pfile final \

--clump regression.glm.linear \

--clump-p1 1e-8 \

--clump-p2 1e-8 \

--clump-r2 0.2 \

--clump-kb 100 \

--out clumping_results


But I keep getting this error:
"Error: Unrecognized flag ('--clump')"

Can anyone help me with this please?

Chris Chang

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Jul 5, 2024, 10:07:23 AM (11 days ago) Jul 5
to Farnoosh, plink2-users
You need to ask a system administrator to install a newer plink2 build on your system, or do it yourself.

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Farnoosh Ghaffaran

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Jul 5, 2024, 11:05:15 AM (11 days ago) Jul 5
to Chris Chang, plink2-users
Great!
Thanks, I'll do that. 
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