plink2: Unrecognized flag ('--homozyg'), was done in plink1.9, ut my files are in pfile format

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Getachew Birhanu

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Jul 15, 2024, 9:46:23 AM (yesterday) Jul 15
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anyone who knows the alternate code in plink2 for  --homozyg', please help me.

error output is here 
< ./plink2 --pfile core_snp_164_accessions_filtered --homozyg --homozyg-window-snp 50 --homozyg-kb 100 --out core_snp_164_accessions_haplotypes PLINK v2.00a6LM 64-bit Intel (4 Jul 2024) www.cog-genomics.org/plink/2.0/ (C) 2005-2024 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to core_snp_164_accessions_haplotypes.log. Options in effect: --homozyg --homozyg-kb 100 --homozyg-window-snp 50 --out core_snp_164_accessions_haplotypes --pfile core_snp_164_accessions_filtered Start time: Mon Jul 15 06:59:32 2024 Error: Unrecognized flag ('--homozyg'). For more info, try "plink2 --help <flag name>" or "plink2 --help | more".  >

Christopher Chang

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Jul 15, 2024, 8:44:37 PM (19 hours ago) Jul 15
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Continue using plink 1.9 for this command; it is not yet implemented in plink2.
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