Generating PLINK file from Illlumina Genome Studio
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Peiyuan Zhu
Oct 9, 2025, 2:21:58 PM (9 days ago) Oct 9
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When generating PLINK file, should I choose UseForwardStrand=TRUE to align the REF/ALT alleles with the NCBI database?
Tutorial link:
https://knowledge.illumina.com/microarray/general/microarray-general-reference_material-list/000003267/?utm_source=agent&utm_medium=email&utm_campaign=kbWill this alone ensure strand information is correct?
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