plink2 meta analysis

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Wenbin Mei

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Oct 22, 2025, 4:00:46 PM (3 days ago) Oct 22
to plink2-users
Hi plink2 team,
Is there a plink2-equivalent command to plink --meta-analysis? I am now manually converting plink2 .glm.logistic.hybrid to plink1.9 .assoc by taking the 
BETA = log(OR)
SE = LOG(OR)_SE
P=P
and run meta analysis:
plink --meta-analysis file1.assoc file2.assoc + logscale no-map --out output

Thanks!

Chris Chang

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Oct 22, 2025, 7:18:46 PM (3 days ago) Oct 22
to Wenbin Mei, plink2-users
Sorry, this is not implemented in plink2 yet.

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