--exclude-palindromic-snps flag not recognised in latest release

7 views
Skip to first unread message

Gabriel Doctor

unread,
Nov 24, 2025, 9:25:47 AM (11 days ago) Nov 24
to plink2-users
Hi Chris, 
Just drawing your attention to this, as I know you implemented it recently. 

PLINK v2.0.0-a.6.28LM AVX2 Intel (23 Nov 2025)      cog-genomics.org/plink/2.0/
(C) 2005-2025 Shaun Purcell, Christopher Chang    GNU General Public License v3
Logging to {REDACTED}
Options in effect:
  --autosome
  --exclude-palindromic-snps
  --geno 0.01
  --hwe 1e-300 keep-fewhet
  --maf 0.001
  --make-pgen
  --out {ukbquickfilt}
  --pfile {REDACTED}
  --snps-only

Start time: Mon Nov 24 13:23:40 2025
Error: Unrecognized flag ('--exclude-palindromic-snps').
For more info, try "plink2 --help <flag name>" or "plink2 --help | more".

Chris Chang

unread,
Nov 24, 2025, 9:59:46 AM (10 days ago) Nov 24
to Gabriel Doctor, plink2-users
Because it was implemented recently, you need to use the development build (a7) to access it.

--
You received this message because you are subscribed to the Google Groups "plink2-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to plink2-users...@googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/plink2-users/044f06f2-903d-40ec-b90e-f4420cc2fc1an%40googlegroups.com.

Gabriel Doctor

unread,
Nov 25, 2025, 5:35:30 AM (10 days ago) Nov 25
to plink2-users

thanks
Reply all
Reply to author
Forward
0 new messages