PLINK 2 --glm condition --multiallelic

[Aidan O'Brien]

Hi,

Looking for some advice regarding conditioning a glm analysis on a multiallelic variant. 

I notice that multiallelic implementation is still under development. 

Any suggestions for a workaround? Would representing the additional alleles as covariates be an appropriate way to go?

Thanks!

[Chris Chang]

Yes, that would work (and be equivalent to what the ‘multiallelic’ modifier will do when it is implemented).

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[Aidan O'Brien]

Perfect - thanks!

Looking forward to the upcoming multiallelic implementation.