Conversion of PLINK binary(.bed, .bim and .fam) to PLINK Flat (.ped and .map) Files

[Prasad]

Dear Friends,

Since my emails to developers (sh...@pngu.mgh.harvard.edu, chrc...@alumni.caltech.edu, pl...@chgr.mgh.harvard.edu, shaun....@mssm.edu) didnot get any attention (the delivery to the emails failed), can anyone please help me with my following question?

1. I want to convert the Plink binary format (.bed, .bim and .fam) to flat file format (.ped and .map).

2. I also want to apply filter option to get data only for selected genotypes/individuals.

I am using PLINK v1.07

Thank you very much in advance.

Regards,

Prasad

[DNAndo85]

To convert binary format into flat format, just use the --recode flag
When it comes to filtering samples and markers, the related flags are --keep/--remove --extract/--exclude.
Everything is perfectly explained on the Plink website, and includes working examples, please have a look!
I also suggest you to move to a newer version of Plink which will be way faster than v1.07

Il giorno mercoledì 21 giugno 2017 15:06:41 UTC+2, Prasad ha scritto:

Dear Friends,

Since my emails to developers (sh...@pngu.mgh.harvard.edu, chrc...@alumni.caltech.edu, pli...@chgr.mgh.harvard.edu, shaun.pu...@mssm.edu) didnot get any attention (the delivery to the emails failed), can anyone please help me with my following question?

[Prasad]

THANK YOU VERY MUCH FOR THE REPLY. I WILL TRY WITH THE NEWER VERSION...