PLINK1.9 return p value = 0 for meta analysis

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Michelle Chen

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Aug 5, 2026, 1:29:20 PM (4 days ago) Aug 5
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Hi,

I used --meta-analysis on plink1.0 for meta-analysis for eQTL analysis but it returns p value = 0 for some associations. Is it because my p values are too small so that plink rounded to 0? Any input will be much appreciated. 

Thanks,
Michelle
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