produced NA values converting bgen to bfile

[수기]

hi, 

I am converting imputed BGEN data to bfile (using --make-bfile) to build an LD panel, but I observe missing (NA) values in bed file.

Is there a recommended way to avoid generating missing values in this process?

Thank you

[Chris Chang]

See 

https://www.cog-genomics.org/plink/2.0/input#dosage_import_settings .

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