pLink and cross-linking

Dear all, pLink 1.15 is now released. This version has the following changes: * Candidate peptides

Dear all, pLink 1.14 is now released. This version has following changes: * FDR control is now

Hi All, The Plink2 is genuinely fast an user friendly. Thank you so much pLInk team for providing us

I just engaged the only computationally literate guy in the lab to set up the converter for proxl.

I figured it out: I guess pLink-SS is not compatible with HyperThread technique on Intel CPU, so when

How to put a command in pLink filter part for keeping first , second and third isotopic masses within

It's been a while since I needed to use pLink, but recently I performed a new crosslinking

Thank you!!! On Tuesday, 21 July 2015 19:58:36 UTC+1, Kelly Molloy wrote: Make sure the ini file

Hello, I am trying to identify crosslinks between heavy and light lysines, but am running into

When I try to run the latest version, I get this error: Failed to run Index: No section: 'Head

Hi! I'm still using plink and am using it mainly in HCD mode as the authors also claim, still,

Hello users, Thanks you so much. I am new user of p link. I am having lot of issue with p link during

Hi pLINKERS, I'm spending many efforts to obtain annotated spectra, but I had several

Dear pLink developers, I really appreciate pLink and the results it produces. I just want to ask for

Dear pLink users, I am running pLink with my converted files from wiff files (Data acquisition was

Hello, today I wanted to analyse two raw files of HCD data acquired on an Orbitrap Elite with pLink.

In following up to myself, it looks like the "myfile_inter_combine.spectra.xls" is the one

Hi everyone, If I want to use SDA or LC-SDA as my crosslinker, how do I enter that into the xlink.ini

Hi Jonas, According to my knowledge, pLink doesn't have special design for the CID cleavable

I should note; I can save spectra individually by this method, but the batch "Save all spectra

I am having problems with the Searcher failing in pLink-SS. Has anyone solved this problem?. I

Sill unable to install pLink-SS with pLink also on computer. The following error file iswritten can

Hello, We are trying to use pLink to determine disulfide bond cross-linking. We were able to download

Hi All, I have just started to use pLINK recently and I was able to get pLINK to run without any

Alice, I found a perl script that is part of the perl module InSilicoSpectra. It's called split-

Hi All, Hopefully this isn't a silly question, but I've also been seeing similar results to

Well, use the ram disk is a good idea to accelerate. I have never used that, but as far as I know,

Hi, Yes, sorry I made two mistakes in my early reply. The correct version should be: isopept=K ) -

The problem isn't the size of the fasta file, it is the extension. If the file extension is

Thanks for the advice. I think I'd better hold off on uninstalling the version that works - got

Hi, not sure of the details. Has the search completed successfully before builder.exe?

I changed the name as you suggested and now everything works! I am glad I could contribute to find a