Error while executing Platypus run

[Abhilash Dwarakanathan]

Hello,

I am having the an error while executing commands which I have highlighted in bold below. Its the same error.

It reads:

abhilash@abhilash-Vostro-2420:~/Desktop/Platypus_0.8.1$ ./Platypus.py
Traceback (most recent call last):
  File "./Platypus.py", line 9, in <module>
    import runner
  File "/home/abhilash/Desktop/Platypus_0.8.1/runner.py", line 9, in <module>
    import variantcaller
  File "htslibWrapper.pxd", line 203, in init variantcaller (variantcaller.c:16971)
ImportError: libhts.so.1: cannot open shared object file: No such file or directory

abhilash@abhilash-Vostro-2420:

~$ Platypus.py callVariants --bamFiles=output_sorted_marked_dups.bam --output=variants.vcf --refFile=hg19.fasta --logFileName=log_Platypus --nCPU=4 --minFlank=0

Traceback (most recent call last):

  File "/usr/local/bin/Platypus.py", line 9, in <module>
    import runner
  File "/usr/local/lib/Platypus_0.8.1/runner.py", line 9, in <module>
    import variantcaller
  File "htslibWrapper.pxd", line 203, in init variantcaller (variantcaller.c:16971)

ImportError: libhts.so.1: cannot open shared object file: No such file or directory

I have installed htslib-1.1 using 'make' and 'make install' commands.

Can you please let me know how you set right this error.

Eagerly Awaiting.

/ Abhilash Dwarakanathan

[Daniel Cooke]

Hi Abhilash,

Have you followed the instructions in the README (also seen on the Github page)?

Best

Dan

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