The algorithm used for banded alignment in chaplotype.pyx

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Hasindu Gamaarachchi

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Apr 18, 2017, 4:08:34 AM4/18/17

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I am trying to understand the algorithms behind Platypus. Can I know what is the name of the algorithm used in alignReadToHaplotype in chaplotype.pyx in the source code? Is it pairHMM or a different one?

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