No filename found after mapping

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Mathew C

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Apr 8, 2025, 3:02:02 PM4/8/25
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Hello, 
I am using Brie genome-wide mouse library with three samples. The reads are aligned and mapped successfully (about 86% for each step) but no matter what I do, it says filenames not found at this step: 
Averaging read counts over replicates ...

Does anyone know what to do or how to fix this? I have the output files too.

Thank you!

Mathew C

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Apr 8, 2025, 4:48:34 PM4/8/25
to PinAPL-Py
Edit. Here are the links to the html files with the run histories:
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