PinAPL-Py

Hi all, I have the same issue as Chintan. I have uploaded my FastQ files onto the server yesterday

Edit. Here are the links to the html files with the run histories: https://drive.google.com/file/d/

I've already submitted a bug regarding this so sorry for commenting again but I'm getting a

Thank you for the quick response! Now everything is working fine. Nathan Lewis schrieb am Donnerstag,

Hello, I'd like to first thank you for creating this wonderful tool. I successfully completed a

Hi Iris, I tried again today and i was able to upload files!! On Wednesday, December 18, 2024 at 11:

Hi all, As some people have previously reported, I have issues when uploading my files to the system.

submitted a test run just to see where things were at 20 runs in the queue will be reaching out On

Dear PinAPL-Py group, Hi, firstly, I would like to express my sincere gratitude for developing the

Hi, I successfully uploaded my data, and the run seems processed for a couple of days. But after that

Hi, I know that many people have the same problem before. I wonder if there is a solution to that. Is

Hello, May I ask if we use the PinAPL-analysis if we use the dual sgRNA system for screening, ie two

How are the Z-scores calculated by PinAPL-PY? When downloading my results it includes a Z-score graph

4 runs ahead; I have been waiting for >24hrs. Is the server down? Thanks!

Hello, I'm wondering if anyone has had any luck running this tool with a single control sample (

Hi all, I am facing issues with the uploading system: I've been trying since Friday but the

Hi, It's been saying 3 runs ahead for a whole day. Does it need to be updated? Thanks

Hello, For my CRISPR screen, I have three conditions: control, and treatment A and B. I analyzed

Hi All, I have the same question asked by Karthi two years ago, regarding the non-target control.

I am still trying to troubleshoot this but did you concatenate your fastq files going in? When I

9 Runs ahead since several hours. Needs a reebot? Thanks!

Hi, Thank you making a great web-based tool for CRISPR analysis. I am Habin, working in JHMI. I just

Hi Jianfeng, Apologies that no one got back to you on this sooner. Attached you will find the sgRNA

Hi all, Apologies that no one got back to you on this sooner. I had a similar question about

Hi Dan, Apologies that no one got back to you on this sooner. I had the same question. I have

Hi, I tried to use PinAPL and compare the various processing and analysis methods available (which

Thanks a lot Tyler! On 11/25/2022 11:36 PM, Su Hyun Kim wrote: Yes, it's now working! Thank you

Hi, When I run my samples, 3 control and 3 treatment, but treatment 2 showed no record to view of

Hi Piotr, changing the normalization can absolutely change the results, in particular when read

Me too, I am "third" on the queue. On Monday, June 20, 2022 at 10:41:59 AM UTC-5 Maria De