picrust-users

hi there, I just got result of dataset about 16S rRNA bacterial metagenomics analysis from third

Hi there. I am new here I just confusing about the heatmap KEGG pathway prediction My sample is

I do not use picrust2 often so I'm sure I'm overlooking something obvious, but does anyone

That's not currently an option with the default files, but I believe that if you made a mapping

Hi there, I'm sure that the different versions would have created differences, but I am unsure

Had to address some other questions but now back to this - thanks for the headsup - but as far as I

Thank you very much! It worked Best, Alla вторник, 29 октября 2024 г. в 18:27:01 UTC+3, roby...@gmail

Hello, Can you show me the full error message that you receive, as well as the contents of the folder

Hi there Chao-Jui, I fairly recently added a new FAQ response about this to the PICRUSt2 wiki: https:

Hey! I am getting this error: /home/localadmin/bin/miniconda3/envs/picrust2_env/lib/python3.6/site-

Hi I had an issue originally that reference files were not available in my installation and I was not

Hi Robyn, I faced with the exact same issue when installing v2.5.3.2 and couldn't fix it after

Hi Timothy, Can you show the full command that you're running please? That error doesn't

Hi Rachele, I believe that that function was made for the primary purpose of comparing PICRUSt2

Hi there, I think that is an issue with your Rcpp install - some other people have had similar issues

Thank you so much for the detailed clarification Robyn. I have used the eHOMD sequences to train the

Hi again, I'm just answering this here so that others can see it in the respective conversation,

Dear Gavin, I have currently two issues using PICRUSt2 1) I would like to predict 16s gene copy

Hello, You can see some example data files on the tutorial page here: https://github.com/picrust/

Hello, PICRUSt is for creating predictions of what would be in the meta genome. If you already have

Hi there, We recently ran some workshops where we used PICRUSt2 and did some downstream analyses

Hello Robyn, Thank you so much for your confirmation. Best wishes, Yannan On Mon, Jul 22, 2024 at 12:

Hi Erica, Apologies for the slow reply. Essentially, you don't need to further normalise the

Hi Vincent, Apologies for the slow reply, and also apologies that I don't think that I can be of

Hello, I'm afraid that it's a while since I've used the Mothur pipeline myself, but

Hi there, PICRUSt2 actually doesn't really classify sequences. As you can see in the main

Hi there, Apologies for the slow reply. I don't have experience with Nanopore data personally, so

Hi there, Apologies for my slow reply. ggpicrust2 is actually made by a different team, so I'd

Hi there, Apologies for the slow reply. You're right to remove the gaps - the fasta that you

Hi there, Could you see if the fix mentioned here works? Thanks, Robyn On Monday 1 April 2024 at 16: