Looking for: ['picrust2=2.5.2']
bioconda/osx-arm64 124.0 B @ 154.0 B/s 0.8s
bioconda/noarch @ 1.6MB/s 3.1s
conda-forge/osx-arm64 @ 2.1MB/s 4.4s
conda-forge/noarch @ 3.2MB/s 4.8s
Could not solve for environment specs
The following package could not be installed
└─ picrust2 2.5.2** is uninstallable because it requires
└─ biom-format >=2.1.10 , which does not exist (perhaps a missing channel).
And when I try to install from source, I get this error:
(base) rebeccab@vpn17225160148:~/picrust2-2.5.2$ mamba env create -f picrust2-env.yaml
conda-forge/osx-arm64 Using cache
conda-forge/noarch Using cache
bioconda/osx-arm64 Using cache
bioconda/noarch Using cache
r/osx-arm64 124.0 B @ 176.0 B/s 0.7s
anaconda/noarch 462.2kB @ 403.6kB/s 1.2s
r/noarch 864.1kB @ 687.3kB/s 1.3s
anaconda/osx-arm64 1.0MB @ 744.8kB/s 1.4s
pkgs/main/osx-arm64 2.1MB @ 1.4MB/s 1.6s
pkgs/main/noarch 853.2kB @ 495.1kB/s 1.0s
pkgs/r/osx-arm64 118.0 B @ 68.0 B/s 0.5s
pkgs/r/noarch 2.0MB @ 860.9kB/s 1.2s
Looking for: ["biom-format[version='>=2.1.10']", 'cython', 'epa-ng=0.3.8', 'gappa=0.8.0', "glpk[version='>=4.65']", "h5py[version='>=2.10.0']", "hmmer[version='>=3.1b2,<=3.2.1']", "jinja2[version='>=2.11.3']", "joblib[version='>=1.0.1']", "numpy[version='>=1.19.5']", "pandas[version='>=1.1.5']", "pytest[version='>=4.4.1']", "pytest-cov[version='>=2.6.1']", "python[version='>=3.5,<3.9']", "r-base[version='>=3.5.1']", "r-castor[version='>=1.7.2']", "scipy[version='>=1.2.1']", 'sepp=4.3.10']
Could not solve for environment specs
The following packages are incompatible
├─ biom-format >=2.1.10 does not exist (perhaps a typo or a missing channel);
├─ epa-ng 0.3.8** does not exist (perhaps a typo or a missing channel);
├─ gappa 0.8.0** does not exist (perhaps a typo or a missing channel);
├─ hmmer >=3.1b2,<=3.2.1 does not exist (perhaps a typo or a missing channel);
├─ r-castor >=1.7.2 does not exist (perhaps a typo or a missing channel);
└─ sepp 4.3.10** does not exist (perhaps a typo or a missing channel).
Any seasoned advice for a newbie would be greatly appreciated!
best,
Rebecca
System information
==================
Platform: darwin
Python version: 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:37:07) [Clang 15.0.7 ]
Python executable: /Users/harrison/miniconda3/bin/python
Dependency versions
===================
click version: 8.1.7
NumPy version: 1.26.1
SciPy version: 1.11.3
h5py version: 3.10.0
biom-format package information
===============================
biom-format version: 2.1.15
# add bioconda channels: https://bioconda.github.io/recipes/picrust2/README.html & https://www.ddocent.com//bioconda/
conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge
# order matters, check:
conda config --show channels
channels:
- conda-forge
- bioconda
- defaults
# change channel order: https://bioconda.github.io/tutorials/gcb2020.html#conda-channels
conda config --prepend channels bioconda
conda config --prepend channels conda-forge
3- installed picrust2 from source (stand alone)