Oct 25, 2021, 3:21:30 AM10/25/21
I am trying different thresholds for the --min_reads parameter in the third step of Picrust2. If I weel understood, the only difference with not putting this parameter is that the OTUs bellows the threshold will be flaged as 'RARE' in stratified output, and there is no differences in the calculation of abundances ?
I think it would be great if these OTUs could be removed for the following analysis, like the '--max-nsti' parameter. But maybe there are reasons why they are not :)
Thank's by advance for clarifications