PICRUST2 unable to produce full output

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NGS MyTACG

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Sep 19, 2021, 5:32:34 PM9/19/21
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Dear all and Gavin,

I have tried many times to run the PICRUST2 full pipeline but it kept producing incomplete outputs with error message.

I attached the screenshot which is self-explained with the error message.
Kindly advise what is happening and suggest your solutions.

Thank you!

error_snapshot_2.jpg
error_snapshot.jpg

Gavin Douglas

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Sep 20, 2021, 11:58:16 AM9/20/21
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Are you able to run other R commands? I think there may be an issue with how you are installing R tools in your conda environment, as discussed here: https://support.bioconductor.org/p/9138861/


Cheers,

Gavin

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<error_snapshot_2.jpg><error_snapshot.jpg>

NGS MyTACG

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Sep 21, 2021, 1:48:42 PM9/21/21
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Dear Gavin,

Yes. After I updated the R and Rscript versions to 4.1.1 and install the castor package, the problem solved and PICRUSt2 works perfectly!

Thanks!!!

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