I have a trouble when using this command:
pathway_pipeline.py \
> -i KO_metagenome_out/pred_metagenome_contrib.tsv.gz \
> -o KEGG_pathways_out \
> -p 1 \
> --no_regroup \
> --map ~/miniconda3/envs/picrust2/lib/python3.6/sitepackages/picrust2/default_files/pathway_mapfiles/KEGG_pathways_to_KO.tsv
Traceback (most recent call last):
File "/home/buah2023/miniconda3/envs/picrust2/bin/pathway_pipeline.py", line 7, in <module>
exec(compile(f.read(), __file__, 'exec'))
File "/mnt/c/biogas/picrust2-2.4.1/scripts/pathway_pipeline.py", line 272, in <module>
main()
File "/mnt/c/biogas/picrust2-2.4.1/scripts/pathway_pipeline.py", line 155, in main
check_files_exist([args.input, args.map])
File "/mnt/c/biogas/picrust2-2.4.1/picrust2/util.py", line 406, in check_files_exist
raise ValueError("This input file was not found: " + missing_files[0])
ValueError: This input file was not found: /home/buah2023/miniconda3/envs/picrust2/lib/python3.6/sitepackages/picrust2/default_files/pathway_mapfiles/KEGG_pathways_to_KO.tsv
can someone help me?