Hi,
I am running the pipeline and for some reason, the "metagenome_pipeline.py" for KO_metagenome is giving weird errors. I ran it before and it worked fine for the whole pipeline. It also worked with EC and pathway for this dataset.
When running the full pipeline, I got an error:
Error running this command:
metagenome_pipeline.py --input asv_rare.biom --function ../picrust2_output/KO_predicted.tsv.gz --marker ../picrust2_output/marker_predicted_and_nsti.tsv.gz --min_reads 1 --min_samples 1 --out_dir ../picrust2_output/KO_metagenome_out --metagenome_contrib --max_nsti 2.0 --strat_out
Standard output of failed command:
""
Standard error of failed command:
""
and when I ran "metagenome_pipeline.py" it gives "Killed: 9"
I wonder if anyone can help.
Thanks,