FW: PICRUST visualization

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Levesque, Nicole M.

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Jul 18, 2016, 9:36:50 AM7/18/16
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Hi all,

Can someone please help Pipat?

Thanks,

Nicole

 

From: Pipat Piewngam [mailto:pipa...@hotmail.com]
Sent: Friday, July 15, 2016 5:26 PM
To: Huttenhower, Curtis; Levesque, Nicole M.
Subject: PICRUST visualization

 

Dear Dr. Nicole, 

 

I'm Pipat Piewngam, Research fellow from Thailand. My work is going on about Microbiome analysis. I found your metagonomic tool "PICRUST" on "Galaxy" web-base, is very useful and very good for me. I have a question about this issue.  After I ran PICUST on Galaxy, I got two files 1) Predict Metagenome and Categorize by Function. I try to visual both files to get graph but I can't.

 

Could you please tell me how can I do it for visualization both files?

 

Thank you in advanced and have a nice weekend

 

PIPAT

   


 
Pipat Piewngam
Ph.D. candidate in Medical Microbiology

Department of Microbiology,

Faculty of Medicine Siriraj Hospital,

Mahidol University, Thailand

 

Tel. 085-8023666 

Jose F Garcia Mazcorro

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Jul 18, 2016, 10:33:27 AM7/18/16
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What about using STAMP?


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Morgan Langille

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Jul 18, 2016, 11:30:51 AM7/18/16
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You can look at this tutorial which guides you in the use of PICRUSt and how to visualize within STAMP. 



--------------------------------------------
Dr. Morgan Langille
Canada Research Chair in Human Microbiomics
Assistant Professor
Department of Pharmacology, Dalhousie University

Director
Integrated Microbiome Resource (IMR)
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