Salmonella enterica proteomes

29 views
Skip to first unread message

Meagan Hamblin

unread,
May 9, 2020, 12:33:39 PM5/9/20
to Phyre
Hi, 
It would be really helpful if three Salmonella enterica proteomes could be included. Salmonella enterica subsp. enterica serological variants cause significant disease burden in the human population, and they are genetically tractable model bacterial pathogens for studying enteric and intracellular infection. 

Salmonella enterica serovar Typhimurium strain SL1344 may cause gastroenteritis in humans, and systemic infection in mice. Many labs use SL1344 as a model pathogen to investigate intestinal infection, systemic dissemination, and immune responses to bacterial pathogens. The FASTA file is attached, NCBI source is here: https://www.ncbi.nlm.nih.gov/genome/152?genome_assembly_id=154382

Salmonella enterica serovar Typhi strain Ty2 is a common laboratory strain of the causative agent of typhoid fever, and is closely related to MDR clinical isolates of interest. The FASTA file is attached, the NCBI source is here: https://www.ncbi.nlm.nih.gov/genome/152?genome_assembly_id=299225

Salmonella enterica serovar Typhi strain CT18 is a laboratory strain of the causative agent of typhoid fever, and is the reference genome for Typhi. CT18 contains two extra plasmids and slightly different horizontally acquired genes in its genome compared to Ty2. The FASTA file is attached, the NCBI source is here: https://www.ncbi.nlm.nih.gov/genome/152?genome_assembly_id=154363


SL1344proteome_GCF_000210855.2_ASM21085v2_protein.faa
Ty2proteome_GCF_000007545.1_ASM754v1_protein.faa
CT18proteome_GCF_000195995.1_ASM19599v1_protein.faa

Diego Armando Andrade Alviarez

unread,
May 9, 2020, 4:31:30 PM5/9/20
to meag.h...@gmail.com, Phyre
Dear Dr. Hamblin

I received an email from you with scientific information regarding the proteome of Salmonella. I think you sent it to the wrong email address. This email is to inform you about it. 

Without any further,
Best regards. 

Diego A. 


--
You received this message because you are subscribed to the Google Groups "Phyre" group.
To unsubscribe from this group and stop receiving emails from it, send an email to phyre+un...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/phyre/3f77aa79-1b56-4d00-b6b8-93ac215926da%40googlegroups.com.
Reply all
Reply to author
Forward
0 new messages