Phyre2.2 One 2 One Threading Problem

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Leo D'Agostino

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Feb 20, 2025, 4:30:18 PMFeb 20
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I have been able to generate structures for several proteins no problem using the normal predictive model, but I am running into an issue with the One 2 One Threading. After the job "completes" there are no results. On the results page I get a " Phyre2 File not Found" error", which is attached. When I go to the previous runs page it says the job is complete, but when I click on results its just bring up the same error page.


phyre2 error.png

Powell, Harold

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Feb 21, 2025, 4:50:54 AMFeb 21
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Hi Leo

It looks like you've found a bug. For some reason, Phyre is not reading the contents of your supplied PDB file. I'll look into it and put a fix in place.

Best wishes

Harry

Powell, Harold

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Feb 24, 2025, 7:47:22 AMFeb 24
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Hi Leo

I *think* I've fixed the bug - I'm running some tests, but since they might work for me and not for anyone else, it would be best if you tried re-running the job that failed and let me know if there are still problems (or even if it "just worked"!).

Thanks for pointing this out - although we have a lot of tests in place, sometimes they don't pick up errors.

Best wishes

Harry

Leo D'Agostino

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Feb 25, 2025, 10:55:31 AMFeb 25
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Hi Harry,

Thank you for the help and all the work you do on phyre. Now the one 2 one threading produces output and sends it to my email!


Thank you,
Leo
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