Error when install phyml-mpi today

274 views
Skip to first unread message

xiaowei yang

unread,
Oct 4, 2015, 12:13:34 AM10/4/15
to PhyML forum
Help! Guys.
None of the followed command works.
1.
$git clone https://github.com/stephaneguindon/phyml.git
$cd phyml/
$./configure --enable-mpi;
---------------------------------------------------------------
......
    sed: can't read ./ltmain.sh: No such file or directory
    sed: can't read libtoolT: No such file or directory
----------------------------------------------------------------

$make
-----------------------------------------------------------------
......
    CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /data/tni/bin/phyml/missing aclocal-1.14
    cd . && /bin/sh /data/tni/bin/phyml/missing automake-1.14 --foreign
    configure.ac:68: error: required file './ltmain.sh' not found
    Makefile:325: recipe for target 'Makefile.in' failed
    make: *** [Makefile.in] Error 1
-----------------------------------------------------------------

2.
$git clone https://github.com/stephaneguindon/phyml.git
$cd phyml/
$./confphy
-------------------------------------------------------------------
......
Makefile:1665: recipe for target 'mcmc.o' failed
make[2]: *** [mcmc.o] Error 1
make[2]: Leaving directory '/data/tni/bin/phyml/src'
Makefile:388: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/data/tni/bin/phyml'
Makefile:319: recipe for target 'all' failed
make: *** [all] Error 2
---------------------------------------------------------------------


molloy...@gmail.com

unread,
Oct 23, 2015, 3:03:28 PM10/23/15
to PhyML forum
I had this same problem! 

Commands to run are in bold... should work on -enable-mpi flag too? 

Hope this helps!
Erin

-- 

$ cd phyml/
$ ./configure
configure: error: cannot find install-sh, install.sh, or shtool in "." "./.." "./../.."
$ autoreconf

configure.ac:17: error: required file './compile' not found

configure.ac:17:   'automake --add-missing' can install 'compile'

configure.ac:15: error: required file './config.guess' not found

configure.ac:15:   'automake --add-missing' can install 'config.guess'

configure.ac:15: error: required file './config.sub' not found

configure.ac:15:   'automake --add-missing' can install 'config.sub'

configure.ac:5: error: required file './install-sh' not found

configure.ac:5:   'automake --add-missing' can install 'install-sh'

configure.ac:68: error: required file './ltmain.sh' not found

configure.ac:5: error: required file './missing' not found

configure.ac:5:   'automake --add-missing' can install 'missing'

src/Makefile.am: error: required file './depcomp' not found

src/Makefile.am:   'automake --add-missing' can install 'depcomp'

autoreconf: automake failed with exit status: 1

$ automake --add-missing

configure.ac:17: installing './compile'

configure.ac:15: installing './config.guess'

configure.ac:15: installing './config.sub'

configure.ac:5: installing './install-sh'

configure.ac:68: error: required file './ltmain.sh' not found

configure.ac:5: installing './missing'

src/Makefile.am: installing './depcomp'

$ libtoolize

libtoolize: putting auxiliary files in `.'.

libtoolize: linking file `./ltmain.sh'

libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and

libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.

libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.

$ ./configure

$ make clean

$ make


Reply all
Reply to author
Forward
0 new messages