error running phylosift

[Igor Tiago]

I'm trying to use phylosift, 

first the link

http://edhar.genomecenter.ucdavis.edu/~koadman/phylosift/phylosift_latest.tar.bz2

is not working.

I have a version that I don't know if it is the correct one phylosift_v1.0.1.tar.bz2 from 2017. I've decompressed it and I've downloaded the datasets from 

https://dash.ucdavis.edu/stash/dataset/doi:10.25338/B8F30J

that I unziped and placed under:/home/igor/share/phylosift/

three folders : ncbi ; markers ; markers_test2.

The problem is that when I try to run I use the command:

 phylosift all Cluster1.fasta

and I have this error:

rm: cannot remove '/home/igor/Desktop/MetaBATBin_vs_MyCCbin_checkm/MyCC/PS_temp/Cluster1.fasta/blastDir/*.aa.1*': No such file or directory

I don't know what is happening.

Can anyone help me?

Thanks in advance

[Guillaume Jospin]

The dash download was for testing purposes, I'm not sure the correct database has been uploaded to that.

Download the markers.tgz from https://figshare.com/articles/PhyloSift_markers_database/5755404

and unpack it in the location you mention.

start with "phylosift index" then try "phylosift all Cluster1.fastq"

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