question: abundance estimates
38 views
Skip to first unread message
kimseonw
Jun 8, 2017, 5:08:55 PM6/8/17
to PhyloSift
Hi.
Please let me ask some questions and help me to find the better or best way for taxa abundance estimates.
html files generated with sequence_taxa.txt does not reflect the abundance information as described on "PhyloSift Outputs"; then would you let me know how to trim/modify sequence_taxa.txt to visualize the abundance with Krona viewer?
May I know how to sort/rearrange the taxasummary.txt to get the accumulated Probability Mass at a certain Taxon_Rank, or any other way to get it?
Thank you very much!
Seon
Please let me ask some questions and help me to find the better or best way for taxa abundance estimates.
html files generated with sequence_taxa.txt does not reflect the abundance information as described on "PhyloSift Outputs"; then would you let me know how to trim/modify sequence_taxa.txt to visualize the abundance with Krona viewer?
May I know how to sort/rearrange the taxasummary.txt to get the accumulated Probability Mass at a certain Taxon_Rank, or any other way to get it?
Thank you very much!
Seon
Reply all
Reply to author
Forward
0 new messages