Markers Database

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Alex Escasinas

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Jul 25, 2019, 6:08:40 AM7/25/19
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I've been using PhyloSift but I'm unsure which markers database to use. What is the difference between markers_20140913.tgz (739.33 MB) and markers.tgz (584.09) ?

Also when I align homologs that were found to the profile HMM marker gene models, I get an error saying "Error: Failed to open covariance model save file share/phylosift/markers/16s_reps_bac/16s_reps_bac.cm"

Thank you,

Guillaume Jospin

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Jul 25, 2019, 10:12:48 AM7/25/19
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The markers dB is more recent than the 2014 one I think. Also there should less markers in the more recent version but it was generated with more reference genomes. 

In one release the cm file had the wrong permissions. You might need to change that manually yourself using chmod. 

Sent from my iPhone
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