Uncaught exception: Failure("Sequence 559094.2.2.73 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 559094.2.2.73 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 73947.1.5.67 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 73947.1.5.67 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 371445.1.2.97 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 371445.1.2.97 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 321368.1.29.100 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 321368.1.29.100 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 930929.2.33.101 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 930929.2.33.101 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 579631.1.10.99 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 579631.1.10.99 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 67158.2.3.77 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 67158.2.3.77 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 11907.1.35.100 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 11907.1.35.100 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 765849.1.16.99 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 765849.1.16.99 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 444768.2.3.65 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 444768.2.3.65 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 192295.2.3.77 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 192295.2.3.77 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 597641.1.6.83 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 597641.1.6.83 doesn't overlap any reference sequences.")
Uncaught exception: Failure("Sequence 959474.2.3.95 doesn't overlap any reference sequences.")
Fatal error: exception Failure("Sequence 959474.2.3.95 doesn't overlap any reference sequences.")
Use of uninitialized value $inf in pattern match (m//) at /home/admins/phylosift_v1.0.1/bin/../lib/Phylosift/Utilities.pm line 2124.
Use of uninitialized value $short_rna_jplace in -e at /home/admins/phylosift_v1.0.1/bin/../lib/Phylosift/
pplacer.pm line 106.
Use of uninitialized value $short_rna_jplace in -e at /home/admins/phylosift_v1.0.1/bin/../lib/Phylosift/
pplacer.pm line 107.
Use of uninitialized value $short_rna_jplace in -e at /home/admins/phylosift_v1.0.1/bin/../lib/Phylosift/
pplacer.pm line 109.
admins@pc1[phylosift_v1.0.1] lastal: bad FASTQ data []
admins@pc1[phylosift_v1.0.1]