Ok, I tried with markers folder "markers_20140913.tgz" instead of using "markers.tgz" and it seems to have worked:
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./phylosift index --config phylosiftrc --debug
Reading config file : phylosiftrc
Found 741 markers
Requesting Indexed_markers : 0
Indexing 741 in PhyloSift/markers2/markers2
Inside index_marker_db
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But am I right using folder dated of the year 2014?
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