How to choose the best one among networks with different hmax values?

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Boka Li

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Mar 30, 2023, 4:34:43 AM3/30/23

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Hi all,

I am using PhyloNetworks to reconstruct a network from about 800 genes. I followed the tutorial in the link (https://crsl4.github.io/PhyloNetworks.jl/dev/man/snaq_plot/) to plot the network scores corresponding to hmax values from 0 to 10 as a line chart. From this chart, two obvious inflection points can be observed (hmax=1 & hmax=8, as the figure attached). In this case, how should I determine the best hmax value and the corresponding network?

Best wishes,

Boka

Cécile Ané

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Mar 30, 2023, 8:11:25 AM3/30/23

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it's unclear I agree!

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