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Welcome to the phyloGenerator mailing list! This is the perfect place to:

Ask questions
Make feature requests
Report bugs
Hear about updates to phyloGenerator

Please do register if you're using the program - I'm actively developing the program, so if you're not on the list you won't know about new features you might find useful!

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1/18/19

Metal not available anymore?

Hi Will, Iam trying to delve into phylogenerator to build a phylogeny for my master thesis.

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Metal not available anymore?

Hi Will, Iam trying to delve into phylogenerator to build a phylogeny for my master thesis.

1/18/19

11/11/18

TAxa found in NCBI genebank but not through Phylogenerator

Hi All I tried to supply a txt file of almost 900 coral reef fish taxa through phylogenerator in an

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TAxa found in NCBI genebank but not through Phylogenerator

Hi All I tried to supply a txt file of almost 900 coral reef fish taxa through phylogenerator in an

11/11/18

Oscar Godoy Research, Will4

2/10/18

problem running beast

Hello Oscar, Please don't apologise; I'm the one who's written the thing with the bug - I

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problem running beast

Hello Oscar, Please don't apologise; I'm the one who's written the thing with the bug - I

2/10/18

Bec Harris, … Will10

11/15/17

Just starting with PhyloGenerator...

Hello Tesa, Thanks for this. As you say, this is a bit off-topic as the problem you describe is

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Just starting with PhyloGenerator...

Hello Tesa, Thanks for this. As you say, this is a bit off-topic as the problem you describe is

11/15/17

madsenm...@appstate.edu

11/14/17

Newick format in R studio

Hi Will, I hope this isn't too off topic, it's just the current impediment to using

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Newick format in R studio

Hi Will, I hope this isn't too off topic, it's just the current impediment to using

11/14/17

Oscar Pérez, Will8

10/20/17

problems downloading sequences of ITS, small subunit RNA gene (mtSSU), and Tsr1

No worries; glad I could help. Cheers, Will --- Need a phylogeny? Try phyloGenerator: original or new

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problems downloading sequences of ITS, small subunit RNA gene (mtSSU), and Tsr1

No worries; glad I could help. Cheers, Will --- Need a phylogeny? Try phyloGenerator: original or new

10/20/17

2/17/17

Version 1.3a released: bug-fixes for BEAST users

Hello everyone, I've just released a new minor version of pG1 on the website. I'd advise all

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Version 1.3a released: bug-fixes for BEAST users

Hello everyone, I've just released a new minor version of pG1 on the website. I'd advise all

2/17/17

Thijs Janzen, Will9

1/30/17

Wrong sequences found

No worries. Best of luck with the paper - it looks great! Will On Mon, Jan 30, 2017, 2:03 PM Thijs

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Wrong sequences found

No worries. Best of luck with the paper - it looks great! Will On Mon, Jan 30, 2017, 2:03 PM Thijs

1/30/17

1/4/17

Anti-virus software on Windows

Hello everyone, Happy new year! At a recent workshop, a number of Windows users were having trouble

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Anti-virus software on Windows

Hello everyone, Happy new year! At a recent workshop, a number of Windows users were having trouble

1/4/17

Alison Ravenscraft, Will2

11/30/16

running phyloGenerator via command line

Hello Alison, Thanks for using the program! Just to be clear, when you say "via command line

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running phyloGenerator via command line

Hello Alison, Thanks for using the program! Just to be clear, when you say "via command line

11/30/16

9/16/16

Version 1.3 release candidate

Hello all, The new version for Windows and Mac (v1.3) is now uploading to the website as I type. This

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Version 1.3 release candidate

Hello all, The new version for Windows and Mac (v1.3) is now uploading to the website as I type. This

9/16/16

lucas.ba...@gmail.com, Will5

9/7/16

Problem to download from NCBI

Hello Lucas, That's very kind of you to find a Windows computer to check it! Please don't go

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Problem to download from NCBI

Hello Lucas, That's very kind of you to find a Windows computer to check it! Please don't go

9/7/16

Losia Nakagawa-Lagisz, … Will10

8/12/16

finding sequences problem

No worries! Glad to hear it. Thanks, Will On Thu, 11 Aug 2016 at 18:34, Sandeep Sen <sandeep.sen@

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finding sequences problem

No worries! Glad to hear it. Thanks, Will On Thu, 11 Aug 2016 at 18:34, Sandeep Sen <sandeep.sen@

8/12/16

gaiar...@gmail.com, … Will17

2/22/16

Missing sequences

Hello, Thanks for this, and thanks also for sending round what you typed in. I think it's really

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Missing sequences

Hello, Thanks for this, and thanks also for sending round what you typed in. I think it's really

2/22/16

2/8/16

Running BEAST through phyloGenerator on Mac and Linux computers

Hello, It's been brought to my attention that something in a new version of Mac/Java makes pG

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Running BEAST through phyloGenerator on Mac and Linux computers

Hello, It's been brought to my attention that something in a new version of Mac/Java makes pG

2/8/16

irene.torr...@gmail.com, Will Pearse3

1/31/16

Bird species phylogenetic tree

...which solved the problem, judging by an off-list conversation. Cheers, Will On Wednesday, 27

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Bird species phylogenetic tree

...which solved the problem, judging by an off-list conversation. Cheers, Will On Wednesday, 27

1/31/16

Wayne Dawson, Will6

4/21/15

Problems with constraint tree names spelling

Glad it's working! Fingers crossed for bigger trees :D Will --- Need a phylogeny? Try

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Problems with constraint tree names spelling

Glad it's working! Fingers crossed for bigger trees :D Will --- Need a phylogeny? Try

4/21/15

4/8/15

phyloGenerator 2!

Hello, After much delay... phyloGenerator 2 is out! Get it now (http://willpearse.github.io/

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phyloGenerator 2!

Hello, After much delay... phyloGenerator 2 is out! Get it now (http://willpearse.github.io/

4/8/15

Thijs Janzen, Will4

3/31/15

Formatting of species.txt

Glad I "helped" :D Bonne chance! Will --- Need a phylogeny? Try phyloGenerator Measuring

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Formatting of species.txt

Glad I "helped" :D Bonne chance! Will --- Need a phylogeny? Try phyloGenerator Measuring

3/31/15

Claudia Stein, Will3

3/11/15

Hello, To bring the list up to speed on what happened off-list, once Claudia showed me her species

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Hello, To bring the list up to speed on what happened off-list, once Claudia showed me her species

3/11/15

kjl...@gmail.com, Will Pearse3

2/25/15

[Errno 2] No such file or directory: 'RAxML_bipartitions.tempOut'

Hello, After talking with Kevin, the problem was with a file that he created himself and loaded into

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[Errno 2] No such file or directory: 'RAxML_bipartitions.tempOut'

Hello, After talking with Kevin, the problem was with a file that he created himself and loaded into

2/25/15

2/18/15

Re: from the very beginning

Hello, Good news! I've fixed the species file (and emailed the corrected version to you), and I

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Re: from the very beginning

Hello, Good news! I've fixed the species file (and emailed the corrected version to you), and I

2/18/15

2/18/15

from the very beginning

I am not sure I have put the species names text in the correct format for phylogenerator to use it

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from the very beginning

I am not sure I have put the species names text in the correct format for phylogenerator to use it

2/18/15

Stefan Pinkert, Will2

11/10/14

Looking for an option to extract more than one sequence per species & gene

Hello, Thanks for emailing. If I understand you correctly, you're asking two questions: (1) how

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Looking for an option to extract more than one sequence per species & gene

Hello, Thanks for emailing. If I understand you correctly, you're asking two questions: (1) how

11/10/14

Stefan Pinkert, … Will6

11/7/14

Gene listing in command line code

Hello, I'm glad it seems to be working for you now. I'm afraid this is a general "

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Gene listing in command line code

Hello, I'm glad it seems to be working for you now. I'm afraid this is a general "

11/7/14

12/4/13

Feedback wanted: help me help you...

Hello, Sorry to bother you, but I'm working on a new release of phyloGenerator and would like

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Feedback wanted: help me help you...

Hello, Sorry to bother you, but I'm working on a new release of phyloGenerator and would like

12/4/13

Guilherme Seger, Will Pearse3

11/21/13

Hello, After a little off-list discussion, there doesn't seem to be a problem with phyloGenerator

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Hello, After a little off-list discussion, there doesn't seem to be a problem with phyloGenerator

11/21/13

John Burley, Will Pearse4

8/29/13

Hello, Thanks for getting in touch. It doesn't surprise me that some of the sequences you

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Hello, Thanks for getting in touch. It doesn't surprise me that some of the sequences you

8/29/13

8/20/13

phyloGenerator v1.2 Released

Hello, There's a new version of phyloGenerator available to download! I've tried to

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phyloGenerator v1.2 Released

Hello, There's a new version of phyloGenerator available to download! I've tried to

8/20/13

7/3/13

phyloGenerator paper released

Hello, The phyloGenerator paper is now online! It's open access, so hopefully should be easy to

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phyloGenerator paper released

Hello, The phyloGenerator paper is now online! It's open access, so hopefully should be easy to

7/3/13

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