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rory bedford
6/9/23
docker image with working installation
Hi everyone, I'm having a bit of a nightmare getting phy up and running for my lab. We have a few
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docker image with working installation
Hi everyone, I'm having a bit of a nightmare getting phy up and running for my lab. We have a few
6/9/23
Konstantinos Chatzidimitrakis
5/25/23
Import Kilosort format in Phy
Hello, I am using the first version of Kilosort which is not compatible with Phy 2. Are there any
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Import Kilosort format in Phy
Hello, I am using the first version of Kilosort which is not compatible with Phy 2. Are there any
5/25/23
Alexa D'Ambra
,
Maxime Beau
2
2/15/23
Export high quality visualization images
Hi, If you are looking for some python code to easily make the same kind of figures as those
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Export high quality visualization images
Hi, If you are looking for some python code to easily make the same kind of figures as those
2/15/23
Luke Bemish
7/14/22
Issue opening FeatureView
Hello, I am having issues using FeatureView with some data exported from Kilosort - the views don
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Issue opening FeatureView
Hello, I am having issues using FeatureView with some data exported from Kilosort - the views don
7/14/22
Matheus Oliveira
4/12/22
Importing data to python
Hi all, is there a way to import the data back to python to plot waveforms? I could open the spike
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Importing data to python
Hi all, is there a way to import the data back to python to plot waveforms? I could open the spike
4/12/22
Pablo Abad Perez
,
Matheus Oliveira
2
4/12/22
Kilosort Compatibility with NVIDIA LHR
Hi, LHR and non LHR are just related to ethash algorhithm, they are the same GPU for everything else,
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Kilosort Compatibility with NVIDIA LHR
Hi, LHR and non LHR are just related to ethash algorhithm, they are the same GPU for everything else,
4/12/22
Zhimin Song
12/9/20
Keyboard shortcuts for waveformView not working
Hello, The keyboard shortcuts for waveformView stopped working for me (windows 10 OS) sometime last
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Keyboard shortcuts for waveformView not working
Hello, The keyboard shortcuts for waveformView stopped working for me (windows 10 OS) sometime last
12/9/20
Brenna Shortal
11/25/20
Pulling depth information out of Phy
Hello Phy Users, I am using KiloSort from https://github.com/madeleinea/KilosortPLX and Phy from
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Pulling depth information out of Phy
Hello Phy Users, I am using KiloSort from https://github.com/madeleinea/KilosortPLX and Phy from
11/25/20
Johannes Passecker
7/20/20
Phy loading Font bug
File "D:\Alluser_Anaconda3\envs\pyks3\lib\site-packages\phy\gui\gui.py", line 728, in
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Phy loading Font bug
File "D:\Alluser_Anaconda3\envs\pyks3\lib\site-packages\phy\gui\gui.py", line 728, in
7/20/20
Lisa Roux
4/9/20
Problem with CCGs displays
Hi everyone, I would like to know whether anyone faces the same issue we have with Phy2 when
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Problem with CCGs displays
Hi everyone, I would like to know whether anyone faces the same issue we have with Phy2 when
4/9/20
Jose Guzman
,
Cyrille Rossant
2
4/3/20
Cannot import SpikeSelector after Phy update
Hi I would suggest to switch to master for both phy and phylib now. From now on, most users should
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Cannot import SpikeSelector after Phy update
Hi I would suggest to switch to master for both phy and phylib now. From now on, most users should
4/3/20
Mana Fazel
3/23/20
phy KwikGUI not working
Hello there, I am trying to run the phy KwikGUI on macOS Catalina, but having a little trouble. After
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phy KwikGUI not working
Hello there, I am trying to run the phy KwikGUI on macOS Catalina, but having a little trouble. After
3/23/20
Diogo Duarte
,
Cyrille Rossant
4
3/12/20
phy installation on MacOS Catalina - stuck in Building wheel for PyYAML (setup.py)
Follow up to this thread: Problem is solved. MacOS Catalina Users: Update your XCode before
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phy installation on MacOS Catalina - stuck in Building wheel for PyYAML (setup.py)
Follow up to this thread: Problem is solved. MacOS Catalina Users: Update your XCode before
3/12/20
Theodora Demetriou
,
Cyrille Rossant
2
3/4/20
GPU for Kilosort
See here : https://github.com/MouseLand/Kilosort2/wiki/8.-Hardware-guide Personally I would recommend
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GPU for Kilosort
See here : https://github.com/MouseLand/Kilosort2/wiki/8.-Hardware-guide Personally I would recommend
3/4/20
Cyrille Rossant
2/7/20
phy 2.0 beta release
Hi all, The beta release of phy 2.0 is now available. Everyone is invited to try it and report any
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phy 2.0 beta release
Hi all, The beta release of phy 2.0 is now available. Everyone is invited to try it and report any
2/7/20
Niranjan Kambi
,
Sara Mahallati
2
1/27/20
Horizontal line in ACG
I had the same question, the documentation has been updated now: The horizontal line shows the
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Horizontal line in ACG
I had the same question, the documentation has been updated now: The horizontal line shows the
1/27/20
Mattia D'Andola
,
Cyrille Rossant
4
1/27/20
reclustering not working
It may not work if klusta is installed into another env, klusta/klustakwik2 need to be installed in
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reclustering not working
It may not work if klusta is installed into another env, klusta/klustakwik2 need to be installed in
1/27/20
Mattia D'Andola
,
Cyrille Rossant
3
1/24/20
problem phy2 and 'utf-8' after update
kwik-gui works, thanks for the help. Il giorno venerdì 24 gennaio 2020 14:21:42 UTC+1, Cyrille
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problem phy2 and 'utf-8' after update
kwik-gui works, thanks for the help. Il giorno venerdì 24 gennaio 2020 14:21:42 UTC+1, Cyrille
1/24/20
Sonia Ruggieri
1/15/20
Waveforms
Hello, I am having some troubles with the waveforms extraction from the *.kwik file generated by
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Waveforms
Hello, I am having some troubles with the waveforms extraction from the *.kwik file generated by
1/15/20
Theodora Demetriou
,
Cyrille Rossant
2
11/22/19
AtttributeError + FeatureHistogramView
This screenshot works for the template GUI but not the Kwik GUI. As for the plugin, do you have the
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AtttributeError + FeatureHistogramView
This screenshot works for the template GUI but not the Kwik GUI. As for the plugin, do you have the
11/22/19
qoeep11
,
Cyrille Rossant
5
11/20/19
RuntimeError("Timeout in _block().")
Thanks The specifications of the PC are as follows. os: Widows10 Home SSD memory: 16 GB I have
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RuntimeError("Timeout in _block().")
Thanks The specifications of the PC are as follows. os: Widows10 Home SSD memory: 16 GB I have
11/20/19
Cyrille Rossant
11/8/19
Re: Similarity always 1.00
As the test data is very small, I suppose that kilosort was not able to compute the similarity
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Re: Similarity always 1.00
As the test data is very small, I suppose that kilosort was not able to compute the similarity
11/8/19
qoeep11
10/30/19
Can't see Cluster View
I started GUI with "phy template-gui params.py", but clusterview is not displayed. When I
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Can't see Cluster View
I started GUI with "phy template-gui params.py", but clusterview is not displayed. When I
10/30/19
Shavika Rastogi
,
Cyrille Rossant
2
10/27/19
Correlogram view in development version of phy (Unexpected behavior)
When it comes to the very central peak of the CCG, it is true that the development version of phy
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Correlogram view in development version of phy (Unexpected behavior)
When it comes to the very central peak of the CCG, it is true that the development version of phy
10/27/19
Shavika Rastogi
10/23/19
Kwik-gui not working ...... (URGENT)
Hi ! I have installed klustakwik to do spike sorting on my dataset. After spike sorting, it generates
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Kwik-gui not working ...... (URGENT)
Hi ! I have installed klustakwik to do spike sorting on my dataset. After spike sorting, it generates
10/23/19
Pierre Pierre Pierre Le Merre
,
Cyrille Rossant
2
10/7/19
Phy2 - js: Uncaught ReferenceError: Table is not defined
Hi, there is a pending issue on GitHub <https://github.com/cortex-lab/phy/issues/874> I'll
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Phy2 - js: Uncaught ReferenceError: Table is not defined
Hi, there is a pending issue on GitHub <https://github.com/cortex-lab/phy/issues/874> I'll
10/7/19
Jose Guzman
,
Cyrille Rossant
2
10/7/19
Defining a custom cluster metrics only in ClustersView (not in SimilarityView)
Hi no that's not possible at the moment, but I opened an issue on GitHub to add this feature.
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Defining a custom cluster metrics only in ClustersView (not in SimilarityView)
Hi no that's not possible at the moment, but I opened an issue on GitHub to add this feature.
10/7/19
Jose Guzman
,
Cyrille Rossant
4
9/10/19
deleting single spikes
It sounds like the right thing to do! Would you be so kind as to indicate me briefly how to create
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deleting single spikes
It sounds like the right thing to do! Would you be so kind as to indicate me briefly how to create
9/10/19
Marcos Coletti
, …
Jose Guzman
4
8/23/19
issue kwik-gui channel-group
Hi Cyrille!!! I did install klusta and everything works greatly! Thanks so much for your help! Jose
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issue kwik-gui channel-group
Hi Cyrille!!! I did install klusta and everything works greatly! Thanks so much for your help! Jose
8/23/19
Jose Guzman
,
Cyrille Rossant
5
8/7/19
How to check for very high firing frequencies.
Cool, it works a like a charm! Thanks! Jose JoSe GuZmAn • The Guzman Lab http://www.guzman-lab.com
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How to check for very high firing frequencies.
Cool, it works a like a charm! Thanks! Jose JoSe GuZmAn • The Guzman Lab http://www.guzman-lab.com
8/7/19