Using "RunAccumulated" in PhreeqPy
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Minjeong Kim
Nov 10, 2019, 7:10:33 PM11/10/19
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Dear PhreeqPy users,
Good day!
I'm Minjeong and trying to use PhreeqPy with MATLAB on Linux.
The iphreeqc commands that I would like to use are "RunAccumulated" and "ClearAccumulatedLines".
I've tested PhreeqPy 0.2 and 0.3. Both versions seemed like there is no attribute for "RunAccumulated" and "ClearAccumulatedLines".
May I kindly ask you how to use those functions in PhreeqPy?
Sincerely,
Minjeong
Dr. Mike Mueller
Nov 10, 2019, 10:12:10 PM11/10/19
to phreeqp...@googlegroups.com
Dear Minjeong,
Am 11.11.19 um 01:10 schrieb Minjeong Kim:
> attribute for "RunAccumulated" and "ClearAccumulatedLines".*
https://www.phreeqpy.com/iphreeqc.html
`ClearAccumulatedLines` is called `clear_accumlated_lines`.
`RunAccumulated`is not implemented yet. I might add it in the future but
don't have firm plans yet to do so. But you can use `run_string` instead.
See the example (https://www.phreeqpy.com/examples.html) for details how
to do this.
Best,
Mike
>
>
> Sincerely,
>
> Minjeong
>
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Am 11.11.19 um 01:10 schrieb Minjeong Kim:
> Dear PhreeqPy users,
>
>
> Good day!
>
> I'm Minjeong and trying to use PhreeqPy with MATLAB on Linux.
>
> The iphreeqc commands that I would like to use are "RunAccumulated" and
> "ClearAccumulatedLines".
>
> *I've tested PhreeqPy 0.2 and 0.3. Both versions seemed like there is no
>
>
> Good day!
>
> I'm Minjeong and trying to use PhreeqPy with MATLAB on Linux.
>
> The iphreeqc commands that I would like to use are "RunAccumulated" and
> "ClearAccumulatedLines".
>
> attribute for "RunAccumulated" and "ClearAccumulatedLines".*
>
>
> May I kindly ask you how to use those functions in PhreeqPy?
You can find all implemented functions here:
>
> May I kindly ask you how to use those functions in PhreeqPy?
https://www.phreeqpy.com/iphreeqc.html
`ClearAccumulatedLines` is called `clear_accumlated_lines`.
`RunAccumulated`is not implemented yet. I might add it in the future but
don't have firm plans yet to do so. But you can use `run_string` instead.
See the example (https://www.phreeqpy.com/examples.html) for details how
to do this.
Best,
Mike
>
>
> Sincerely,
>
> Minjeong
>
> --
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>
> More information about PhreeqPy can be found at http://www.phreeqpy.com.
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Parkhurst, David
Nov 11, 2019, 2:56:58 PM11/11/19
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Sorry, I am not a PhreeqPy user. Try the PhreeqPy forum or Mike Mueller.
David
David Parkhurst
Hydrologist
dlp...@usgs.gov
Profile: https://profile.usgs.gov/dlpark
Project: http://wwwbrr.cr.usgs.gov/projects/GWC_coupled
Hydrologist
dlp...@usgs.gov
Profile: https://profile.usgs.gov/dlpark
Project: http://wwwbrr.cr.usgs.gov/projects/GWC_coupled
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ravi
Nov 11, 2019, 3:03:53 PM11/11/19
to phreeqpy-users
Hi all
In phreeqpy function names have been adapted to better suite python programming style. I have modified phreeqpy in IPhreeqcPy. Take a look at that
https://raviapatel.bitbucket.io/IPhreeqcPy/install.html
Cheers
Ravi
In phreeqpy function names have been adapted to better suite python programming style. I have modified phreeqpy in IPhreeqcPy. Take a look at that
https://raviapatel.bitbucket.io/IPhreeqcPy/install.html
Cheers
Ravi
Message has been deleted
Minjeong Kim
Nov 17, 2019, 7:15:24 PM11/17/19
to phreeqpy-users
Dear Mike,
Thanks for your answer.
I have two questions. The first one is what is accumulate_line for without run_accumulated? and what is "input buffer"?
The second question is: does run_string work same as run_accumulated?
For examples in case of iphreeqc, do example 1 and 2 work in a same way after initializing?
Example 1) iphreeqc.AccumulateLine('SOLUTION_MODIFY 1')
iphreeqc.A ccumulateLine ('totals')
iphreeqc.A ccumulateLine ('Cl 0.1')
iphreeqc.A ccumulateLine('RUN_CELLS')
iphreeqc.A ccumulateLine('-cells 1-2')
iphreeqc.RunAccumulated;
Example 2) STR=['SOLUTION_MODIFY 1'
'totals'
'Cl 0.1'
'RUN_CELLS'
'-cells 1-2']
iphreeqc.RunString(STR);
Thanks in advance.
Sincerely,
Minjeong
2019년 11월 11일 월요일 오후 12시 12분 10초 UTC+9, mmueller 님의 말:
> For more options, visit this group at
> https://groups.google.com/d/forum/phreeqpy-users?hl=en.
>
> More information about PhreeqPy can be found at http://www.phreeqpy.com.
> ---
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Dr. Mike Mueller
Nov 20, 2019, 2:29:44 AM11/20/19
to phreeqp...@googlegroups.com
Am 18.11.19 um 01:15 schrieb Minjeong Kim:
documentation of IPhreeqc.
> The second question is: does run_string work same as run_accumulated?
Good question. I implemented this a few years ago. Looks like I wanted to use
`run_accumulated()` but found `run_string()` much simpler.
> For examples in case of iphreeqc, do example 1 and 2 work in a same way after
> initializing?
>
>
> Example 1) iphreeqc.AccumulateLine('SOLUTION_MODIFY 1')
>
> iphreeqc.A ccumulateLine ('totals')
>
> iphreeqc.A ccumulateLine ('Cl 0.1')
>
> iphreeqc.A ccumulateLine('RUN_CELLS')
>
> iphreeqc.A ccumulateLine('-cells 1-2')
>
> iphreeqc.RunAccumulated;
>
>
>
> Example 2) STR=['SOLUTION_MODIFY 1'
>
> 'totals'
>
> 'Cl 0.1'
>
> 'RUN_CELLS'
>
> '-cells 1-2']
>
>
> iphreeqc.RunString(STR);
>
>
Both should be the same in principle. You can write this simpler. Just look at
the example (https://www.phreeqpy.com/examples.html) and adapt to your needs.
Assuming phreeqc.dat is in the current directory, this should work:
import phreeqpy.iphreeqc.phreeqc_dll as phreeqc_mod
phreeqc = phreeqc_mod.IPhreeqc()
phreeqc.load_database("phreeqc.dat")
phreeqc_input = """
SOLUTION_MODIFY 1
totals
Cl 0.1
RUN_CELLS
-cells 1-2
"""
phreeqc.run_string(phreeqc_input)
Assembling the input string in Python and using `run_string()` is simpler and
very likely also faster. At least in my opinion. ;)
Best,
Mike
> Thanks in advance.
>
>
> Sincerely,
>
> Minjeong
>
>
> 2019년 11월 11일 월요일 오후 12시 12분 10초 UTC+9, mmueller 님의 말:
>
> Dear Minjeong,
>
> Am 11.11.19 um 01:10 schrieb Minjeong Kim:
> > Dear PhreeqPy users,
> >
> >
> > Good day!
> >
> > I'm Minjeong and trying to use PhreeqPy with MATLAB on Linux.
> >
> > The iphreeqc commands that I would like to use are "RunAccumulated" and
> > "ClearAccumulatedLines".
> >
> > *I've tested PhreeqPy 0.2 and 0.3. Both versions seemed like there is no
> > attribute for "RunAccumulated" and "ClearAccumulatedLines".*
> >
> >
> > May I kindly ask you how to use those functions in PhreeqPy?
>
> You can find all implemented functions here:
> https://www.phreeqpy.com/iphreeqc.html
> <https://www.phreeqpy.com/iphreeqc.html>
>
> `ClearAccumulatedLines` is called `clear_accumlated_lines`.
>
> `RunAccumulated`is not implemented yet. I might add it in the future but
> don't have firm plans yet to do so. But you can use `run_string` instead.
> See the example (https://www.phreeqpy.com/examples.html
> <https://www.phreeqpy.com/examples.html>) for details how
> > <mailto:phreeqpy-user...@googlegroups.com <javascript:>>.
> <https://groups.google.com/d/msgid/phreeqpy-users/344cc192-b4c1-456d-8f1f-20258c8ebbe7%40googlegroups.com?utm_medium=email&utm_source=footer>>.
> <mailto:phreeqpy-user...@googlegroups.com>.
> <https://groups.google.com/d/msgid/phreeqpy-users/6c78aca4-b4bf-4057-954f-207b2ae1286e%40googlegroups.com?utm_medium=email&utm_source=footer>.
> Dear Mike,
>
>
> Thanks for your answer.
>
> I have two questions. The first one is what is accumulate_line for without
> run_accumulated? and what is "input buffer"?
PhreeqPy is just a wrapper around IPhreeqc. You can check the original
>
>
> Thanks for your answer.
>
> I have two questions. The first one is what is accumulate_line for without
> run_accumulated? and what is "input buffer"?
documentation of IPhreeqc.
> The second question is: does run_string work same as run_accumulated?
`run_accumulated()` but found `run_string()` much simpler.
> For examples in case of iphreeqc, do example 1 and 2 work in a same way after
> initializing?
>
>
> Example 1) iphreeqc.AccumulateLine('SOLUTION_MODIFY 1')
>
> iphreeqc.A ccumulateLine ('totals')
>
> iphreeqc.A ccumulateLine ('Cl 0.1')
>
> iphreeqc.A ccumulateLine('RUN_CELLS')
>
> iphreeqc.A ccumulateLine('-cells 1-2')
>
> iphreeqc.RunAccumulated;
>
>
>
> Example 2) STR=['SOLUTION_MODIFY 1'
>
> 'totals'
>
> 'Cl 0.1'
>
> 'RUN_CELLS'
>
> '-cells 1-2']
>
>
> iphreeqc.RunString(STR);
>
>
the example (https://www.phreeqpy.com/examples.html) and adapt to your needs.
Assuming phreeqc.dat is in the current directory, this should work:
import phreeqpy.iphreeqc.phreeqc_dll as phreeqc_mod
phreeqc = phreeqc_mod.IPhreeqc()
phreeqc.load_database("phreeqc.dat")
phreeqc_input = """
SOLUTION_MODIFY 1
totals
Cl 0.1
RUN_CELLS
-cells 1-2
"""
Assembling the input string in Python and using `run_string()` is simpler and
very likely also faster. At least in my opinion. ;)
Best,
Mike
> Thanks in advance.
>
>
> Sincerely,
>
> Minjeong
>
>
> 2019년 11월 11일 월요일 오후 12시 12분 10초 UTC+9, mmueller 님의 말:
>
> Dear Minjeong,
>
> Am 11.11.19 um 01:10 schrieb Minjeong Kim:
> > Dear PhreeqPy users,
> >
> >
> > Good day!
> >
> > I'm Minjeong and trying to use PhreeqPy with MATLAB on Linux.
> >
> > The iphreeqc commands that I would like to use are "RunAccumulated" and
> > "ClearAccumulatedLines".
> >
> > *I've tested PhreeqPy 0.2 and 0.3. Both versions seemed like there is no
> > attribute for "RunAccumulated" and "ClearAccumulatedLines".*
> >
> >
> > May I kindly ask you how to use those functions in PhreeqPy?
>
> You can find all implemented functions here:
> https://www.phreeqpy.com/iphreeqc.html
> <https://www.phreeqpy.com/iphreeqc.html>
>
> `ClearAccumulatedLines` is called `clear_accumlated_lines`.
>
> `RunAccumulated`is not implemented yet. I might add it in the future but
> don't have firm plans yet to do so. But you can use `run_string` instead.
> See the example (https://www.phreeqpy.com/examples.html
> to do this.
>
> Best,
> Mike
>
> >
> >
> > Sincerely,
> >
> > Minjeong
> >
> > --
> > You received this message because you are subscribed to the Google Groups
> > ""phreeqpy-users" group.
> > To post to this group, send email to phreeqp...@googlegroups.com
> <javascript:>.
>
> Best,
> Mike
>
> >
> >
> > Sincerely,
> >
> > Minjeong
> >
> > --
> > You received this message because you are subscribed to the Google Groups
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> > To unsubscribe from this group, send email to
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> > For more options, visit this group at
> > https://groups.google.com/d/forum/phreeqpy-users?hl=en
> <https://groups.google.com/d/forum/phreeqpy-users?hl=en>.
> > https://groups.google.com/d/forum/phreeqpy-users?hl=en
> >
> > More information about PhreeqPy can be found at http://www.phreeqpy.com.
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>
> >
> <https://groups.google.com/d/msgid/phreeqpy-users/344cc192-b4c1-456d-8f1f-20258c8ebbe7%40googlegroups.com?utm_medium=email&utm_source=footer
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> https://groups.google.com/d/msgid/phreeqpy-users/344cc192-b4c1-456d-8f1f-20258c8ebbe7%40googlegroups.com
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>
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>
>
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