With the below makefile and clean builds for the FlyingF3 I had the following values in the GCS. Should I post these results in https://github.com/TauLabs/TauLabs/issues/269 as well?
I threw down some waypoints with the PathPlanner gadget. Then took off in stabilized mode, flipped to path planner and it did the right hting. Then flipped into RTH and it started flying home. I'm not sure of the status of HITL, it's not something I've ever tested. If you are using linux it might be worth trying to enable the simulation module though and running in pure simulation mode.
The steps to get it running are
1. Enable the FixedWingFollower module
2. Enable the PathPlanner module
3. On a real system you would also need to enable GPS and set the estimation algorithm to INSOutdoor.
I found the default settings way too aggressive (hence the snaking in the beginning of the path in teh first screenshot). Here are the settings I adjusted too (this is on next).
https://dl.dropbox.com/u/6645063/fixedwing-sitl-20130310.uav