sequences in whole mitochondrial genomes not retrieved
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Cristina Roquet
Nov 7, 2013, 6:11:34 AM11/7/13
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Dear Stephen,
I have recently used Phlawd to obtain mithocondrial dna sequences (such as cytb) for a list of animal species, and it work fine for most of the cases. But I checked manually in Genbank species for which phlawd did not found any sequence, and I discovered that phlawd does not recover cytb sequences if they are only available as part of a whole mitochondrial genome. I tried to reduce coverage to a very low value (0.01) but it still does not manage to retrieve it.
Do you know if there is a way to overcome this problem?
Thank you very much
Cristina
I have recently used Phlawd to obtain mithocondrial dna sequences (such as cytb) for a list of animal species, and it work fine for most of the cases. But I checked manually in Genbank species for which phlawd did not found any sequence, and I discovered that phlawd does not recover cytb sequences if they are only available as part of a whole mitochondrial genome. I tried to reduce coverage to a very low value (0.01) but it still does not manage to retrieve it.
Do you know if there is a way to overcome this problem?
Thank you very much
Cristina
Milton Tan
Feb 18, 2015, 12:31:35 PM2/18/15
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I don't have an answer for this, I just wanted to express that I'm also having this issue, and was wondering if there was either progress or another roundabout way to do this?
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