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Chloe Drummond
,
Stephen Smith
10
5/17/18
PyPHLAWD clusters
great! On Thu, May 17, 2018 at 4:53 PM, Chloe Drummond <chloe.p....@gmail.com> wrote: >
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PyPHLAWD clusters
great! On Thu, May 17, 2018 at 4:53 PM, Chloe Drummond <chloe.p....@gmail.com> wrote: >
5/17/18
Alexander Davila
, …
robert...@gmail.com
10
3/28/18
PHLAWD not compiling
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
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PHLAWD not compiling
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
3/28/18
Marcin Piwczynski
, …
robert...@gmail.com
3
3/28/18
problem during compilation
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
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problem during compilation
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
3/28/18
robert...@gmail.com
3/28/18
Dearest Good Fri
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
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Dearest Good Fri
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
3/28/18
robert...@gmail.com
3/28/18
Dearest Good Friend
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
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Dearest Good Friend
robert...@gmail.com, cac1...@yahoo.com, marciej...@gmail.com, drkd...@gmail.com,
3/28/18
Adriana Benítez
,
Miao Sun
2
11/15/17
Problems to download database
Hi, Which version of PHLAWD are you using? The old version may be not working well with updated
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Problems to download database
Hi, Which version of PHLAWD are you using? The old version may be not working well with updated
11/15/17
yong...@gmail.com
9/7/17
installing error with complier
Hello, everyone I am trying to install PHLAWD on a linux (ubantu stystem) and keeping running into an
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installing error with complier
Hello, everyone I am trying to install PHLAWD on a linux (ubantu stystem) and keeping running into an
9/7/17
PhilipS
4/21/17
phlawd not compiling on Fedora 24
Hi, I tried to compile phlawd on my fedora - but got some errors (which is pasted below) could you
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phlawd not compiling on Fedora 24
Hi, I tried to compile phlawd on my fedora - but got some errors (which is pasted below) could you
4/21/17
Mike Fri
1/24/17
Using listfile doesn't work
Hi, Did any one managed to run the config file using listfile (species or genera, both didn't
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Using listfile doesn't work
Hi, Did any one managed to run the config file using listfile (species or genera, both didn't
1/24/17
Chelsea Pretz
8/10/16
Installing Error with Compiler
Hi, I am trying to install PHLAWD on a Mac and keeping running into an error... I did install
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Installing Error with Compiler
Hi, I am trying to install PHLAWD on a Mac and keeping running into an error... I did install
8/10/16
David J
3/23/16
Installing with Homebrew/Linuxbrew
Is it possible to turn off installing certain dependencies when installing with Linuxbrew? Installing
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Installing with Homebrew/Linuxbrew
Is it possible to turn off installing certain dependencies when installing with Linuxbrew? Installing
3/23/16
Franz Krah
,
Stephen Smith
2
3/16/16
No database is downloaded
Sorry for the late reply. Can you send along the file? On Thursday, March 10, 2016, 'Franz Krah
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No database is downloaded
Sorry for the late reply. Can you send along the file? On Thursday, March 10, 2016, 'Franz Krah
3/16/16
Milton Tan
,
Raymond Moran
3
1/26/16
phlawd compiling from src on Mac
Hi Milton, I am having the same issue as you. Can you tell me exactly how you got around it ? Thanks,
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phlawd compiling from src on Mac
Hi Milton, I am having the same issue as you. Can you tell me exactly how you got around it ? Thanks,
1/26/16
Nomi Hadar
,
Stephen Smith
4
12/30/15
define the identity and coverage percentages for each individual gene
.I think I realize my mistake - PHLAWD works on ONE gene at a time, not on multiple as I though .the
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define the identity and coverage percentages for each individual gene
.I think I realize my mistake - PHLAWD works on ONE gene at a time, not on multiple as I though .the
12/30/15
Nomi Hadar
12/29/15
configuration file -the search field
Can you please explain me what I should write in the search field and in what format? In the article
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configuration file -the search field
Can you please explain me what I should write in the search field and in what format? In the article
12/29/15
nsa...@gmail.com
10/13/15
guide sequences
Hi Stephen, Could you please share the guide sequences from "Some Limitations of Public Sequence
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guide sequences
Hi Stephen, Could you please share the guide sequences from "Some Limitations of Public Sequence
10/13/15
nsa...@gmail.com
,
Stephen Smith
6
10/12/15
problem with running PHLAWD
Good suggestion, I will fix that so they are on different lines > On Oct 12, 2015, at 8:40 AM,
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problem with running PHLAWD
Good suggestion, I will fix that so they are on different lines > On Oct 12, 2015, at 8:40 AM,
10/12/15
Rutger Vos
,
Stephen Smith
4
9/28/15
How does PHLAWD work?
Well, you can put multiple variants of the names and in one branch (that Cody Hinchliff was working
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How does PHLAWD work?
Well, you can put multiple variants of the names and in one branch (that Cody Hinchliff was working
9/28/15
Diogo Borges Provete
, …
Cody Hinchliff
3
8/18/15
Error while compiling phlawd in a Mac Yosemite 10.10.4
I would try downloading the Mac executable directly from the muscle website: http://www.drive5.com/
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Error while compiling phlawd in a Mac Yosemite 10.10.4
I would try downloading the Mac executable directly from the muscle website: http://www.drive5.com/
8/18/15
Nate Upham
,
Stephen Smith
10
4/29/15
Error when querying a compiled database
Sorry for the delay OK, I am thinking that maybe just a few things aren't installed. Do you have
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Error when querying a compiled database
Sorry for the delay OK, I am thinking that maybe just a few things aren't installed. Do you have
4/29/15
Steve Haddock
,
Nate Upham
2
4/8/15
Phlawd readme
Good point! I echo a general confusion and need for outline about the potentials of phlawd, but plan
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Phlawd readme
Good point! I echo a general confusion and need for outline about the potentials of phlawd, but plan
4/8/15
Milton Tan
,
Matthew Nelsen
3
3/3/15
Exclude subspecies?
Subspecies don't have anything consistent about them that can be excluded from the search term,
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Exclude subspecies?
Subspecies don't have anything consistent about them that can be excluded from the search term,
3/3/15
Ben Karin
, …
Milton Tan
14
2/27/15
How to Include User Sequences
Well I got around this by removing all sequences with duplicate taxon names. After running PHLAWD,
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How to Include User Sequences
Well I got around this by removing all sequences with duplicate taxon names. After running PHLAWD,
2/27/15
Miao Sun
2/23/15
Got blast 0 running PLAWD
Hi All, The phlawd seems run through, but i got blast 0, Any advise for this issue? *****************
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Got blast 0 running PLAWD
Hi All, The phlawd seems run through, but i got blast 0, Any advise for this issue? *****************
2/23/15
Miao Sun
,
Cody Hinchliff
7
2/20/15
How to set my reference sequences (sequence.keep)
Hi Cody, I can't sleep for this. I've tried many times with different sequences with various
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How to set my reference sequences (sequence.keep)
Hi Cody, I can't sleep for this. I've tried many times with different sequences with various
2/20/15
Cristina Roquet
,
Milton Tan
2
2/18/15
sequences in whole mitochondrial genomes not retrieved
I don't have an answer for this, I just wanted to express that I'm also having this issue,
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sequences in whole mitochondrial genomes not retrieved
I don't have an answer for this, I just wanted to express that I'm also having this issue,
2/18/15
Shing
, …
cactusre...@gmail.com
9
2/17/15
Problem running PHLAWD, segmentation fault
Thanks Cody! I downloaded the reference from NCBI. Would you please send me a example of ITS as
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Problem running PHLAWD, segmentation fault
Thanks Cody! I downloaded the reference from NCBI. Would you please send me a example of ITS as
2/17/15
Miao Sun
2/17/15
Hi! Anybody home? 0--0 "Segmentation fault"
Hi All, I have come across the same problem as "", and I did not find any solution, even
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Hi! Anybody home? 0--0 "Segmentation fault"
Hi All, I have come across the same problem as "", and I did not find any solution, even
2/17/15
Jimmy Zheng
,
mn
2
2/9/15
Problem with Missing Data after Profile Alignment
Hi Jimmy, I believe phlawd only retains conserved regions of the alignment - so perhaps this is a 5
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Problem with Missing Data after Profile Alignment
Hi Jimmy, I believe phlawd only retains conserved regions of the alignment - so perhaps this is a 5
2/9/15
Ben Karin
1/29/15
how to retain taxonomic duplicates
My recent question was answered as to how to keep user sequences in the alignment. I am also hoping
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how to retain taxonomic duplicates
My recent question was answered as to how to keep user sequences in the alignment. I am also hoping
1/29/15