Biom file(s) not uploading properly

Dylan Dahan

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Apr 8, 2015, 11:24:37 AM4/8/15

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I have tried uploading two different biom files with taxonomy and metadata but each time the loading bar gets to the end and then turns white and does not advance to the next page.

I've attached both files. The first is my complete biom table and the second is a subset of 3500 randomly picked samples. I've tried rerunning QIIMEs scripts multiple times, but the data just does not seem to load.

otu_mc2_w_tax_meta.biom

otu_even_3500_w_tax_and_meta.biom

Dylan Dahan

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Apr 17, 2015, 6:07:09 PM4/17/15

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Problem solved - convert the biom file to a json type file!

Holly Bik

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Apr 30, 2015, 4:25:27 AM4/30/15

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Just to clarify - Phinch only works with BIOM type 1.0 (the output from QIIME 1.8 - the new version of QIIME has a different formatted BIOM file). This Github thread explains the file type differences in more detail, as well as a troubleshooting workflow: https://github.com/PitchInteractiveInc/Phinch/issues/46

Vesselin Baev

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Jul 16, 2019, 11:15:19 AM7/16/19

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What tool you used to convert qiime biom to json, I have same problem Phinch do not want to visualize Qiime 1.9 Biom file

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