PheWeb-UMich

The circles are associations where beta is near zero. I believe it's where abs(beta/sebeta) <

Hi Ping, I don't maintain pheweb anymore, but I know that this issue happens because the version

Dear Peter, Sarah or team, I am trying to check Cholesterol, LDL, HDL in UKBiobank TOPMed-imputed

Hi Wynne, Yeah, you could add that. You want to add 3 more pages like the phenotypes page, but each

Without any more details, I can only recommend more cpu cores and faster storage. You can also run on

I'm just using pheweb for the first time (nice tool!) and everything's pretty much gone great

Dear all, We are interested in "290: Delirium dementia and amnestic and other cognitive

It's worth noting that LocusZoom matches LD information based on chrom/pos/ref/alt, not rsID. The

Hello, One of our variants that should be showing up for all tissues only shows up for two in the

wget should work! Le lundi 31 octobre 2022 à 15:38:12 UTC-4, sz...@yale.edu a écrit : Hello, If there

Huh, curious. What version of pheweb are you using? What did you set for “hg_build_number“ in config.

How many variants? How many phenotypes? I recommend loading on a big machine (50+ cores) or a cluster

I've figured out the issue! My teammate passed me a small subset of the data to work with which

Hi Jenny, PheWeb assumes that all of those are for the alternate allele. Thanks, I just updated the

You need one file for each phenotype (ie, one file per GWAS). Section 3 of the instructions describes

The Manhattan plot pages have a download link. See the top-right of https://pheweb.org/UKB-TOPMed/

Hi! Thanks for your interest in PheWeb. Below are the locations to download summary statistics for

Here are options I can think of: 1. Your users can make google accounts connected to their non-google

Yeah, it sounds like you figured everything out correctly. You're right that for a variant "

Fantastic - thank you so much! On Friday, February 19, 2021 at 11:09:32 AM UTC-8 pjvh wrote: I added

I'm glad you like how pheweb's manhattan plots work! Unfortunately, I don't have any

Sorry about getting back to you so late. Presumably you've figured it out by now. Yeah, that step

It looks like that was failing because there were no significant associations in that tiny test file,

Hello. This group is for discussion of PheWeb. GitHub: https://github.com/statgen/pheweb Citation: