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PheWeb-UMich
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Jennifer Huffman
,
pjvandehaar
2
10/3/21
effect allele when creating your own instance of PheWeb
Hi Jenny, PheWeb assumes that all of those are for the alternate allele. Thanks, I just updated the
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effect allele when creating your own instance of PheWeb
Hi Jenny, PheWeb assumes that all of those are for the alternate allele. Thanks, I just updated the
10/3/21
Mokerina Liao
,
Peter VandeHaar
2
8/4/21
how to generate/input phewas data
You need one file for each phenotype (ie, one file per GWAS). Section 3 of the instructions describes
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how to generate/input phewas data
You need one file for each phenotype (ie, one file per GWAS). Section 3 of the instructions describes
8/4/21
Shicheng Guo
,
Peter VandeHaar
2
7/14/21
Github web page
The Manhattan plot pages have a download link. See the top-right of https://pheweb.org/UKB-TOPMed/
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Github web page
The Manhattan plot pages have a download link. See the top-right of https://pheweb.org/UKB-TOPMed/
7/14/21
Shicheng Guo
,
Sarah Gagliano Taliun
2
7/9/21
Pheweb data download - summary statistics
Hi! Thanks for your interest in PheWeb. Below are the locations to download summary statistics for
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Pheweb data download - summary statistics
Hi! Thanks for your interest in PheWeb. Below are the locations to download summary statistics for
7/9/21
Michael Chong
,
pjvandehaar
2
6/19/21
Login Access outside of Google Accounts?
Here are options I can think of: 1. Your users can make google accounts connected to their non-google
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Login Access outside of Google Accounts?
Here are options I can think of: 1. Your users can make google accounts connected to their non-google
6/19/21
James Pirruccello
,
pjvh
2
3/10/21
Effect allele vs minor allele vs non-reference allele in PheWeb
Yeah, it sounds like you figured everything out correctly. You're right that for a variant "
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Effect allele vs minor allele vs non-reference allele in PheWeb
Yeah, it sounds like you figured everything out correctly. You're right that for a variant "
3/10/21
James Warren
,
Peter VandeHaar
4
2/19/21
upper bound on # of phenotypes?
Fantastic - thank you so much! On Friday, February 19, 2021 at 11:09:32 AM UTC-8 pjvh wrote: I added
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upper bound on # of phenotypes?
Fantastic - thank you so much! On Friday, February 19, 2021 at 11:09:32 AM UTC-8 pjvh wrote: I added
2/19/21
Fedik Rahimov
,
Peter VandeHaar
2
2/10/21
R code for PheWEB
I'm glad you like how pheweb's manhattan plots work! Unfortunately, I don't have any
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R code for PheWEB
I'm glad you like how pheweb's manhattan plots work! Unfortunately, I don't have any
2/10/21
Ashley Qin
,
pjvandehaar
2
2/2/21
Speed up "gather-pvalues-for-each-gene"
Sorry about getting back to you so late. Presumably you've figured it out by now. Yeah, that step
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Speed up "gather-pvalues-for-each-gene"
Sorry about getting back to you so late. Presumably you've figured it out by now. Yeah, that step
2/2/21
Pete Santos
,
Peter VandeHaar
2
8/21/20
Having difficult getting started / following the README does not seem to work
It looks like that was failing because there were no significant associations in that tiny test file,
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Having difficult getting started / following the README does not seem to work
It looks like that was failing because there were no significant associations in that tiny test file,
8/21/20
Sarah Gagliano Taliun
8/18/20
Welcome!
Hello. This group is for discussion of PheWeb. GitHub: https://github.com/statgen/pheweb Citation:
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Welcome!
Hello. This group is for discussion of PheWeb. GitHub: https://github.com/statgen/pheweb Citation:
8/18/20
