2) the old repository has been archived (https://bitbucket.org/danielprice/phantom-archived), since from now on all commits to the phantom repo will be public. This means you need a FRESH copy, as the history is disconnected from the old code.
3) paper will appear on arXiv tomorrow, further comments welcome. Please cite it in your publications.
Best wishes,
Daniel
PS: v0.9.x will refer to versions prior to the paper being accepted. Upon acceptance it will become v1.0.