Error in simulation when restarting from h5 file
Bisesh Joshi
Requested processors and decomposition = 1, npx,y,z= -1 -1 -1
Actual decomposition: npx,y,z= 1 1 1
WARNING: Waypoint at time: 9.4608E+09 is beyond the end of simulation
WARNING: Waypoint at time: 1.2614E+10 is beyond the end of simulation
WARNING: Waypoint at time: 1.5768E+10 is beyond the end of simulation
WARNING: Waypoint at time: 1.8922E+10 is beyond the end of simulation
WARNING: Waypoint at time: 2.2075E+10 is beyond the end of simulation
WARNING: Waypoint at time: 2.5229E+10 is beyond the end of simulation
WARNING: Waypoint at time: 2.8382E+10 is beyond the end of simulation
WARNING: Waypoint at time: 3.1536E+10 is beyond the end of simulation
WARNING: Waypoint at time: 3.7843E+10 is beyond the end of simulation
WARNING: Waypoint at time: 4.4150E+10 is beyond the end of simulation
WARNING: Waypoint at time: 5.0458E+10 is beyond the end of simulation
WARNING: Waypoint at time: 5.6765E+10 is beyond the end of simulation
WARNING: Waypoint at time: 6.3072E+10 is beyond the end of simulation
Restarting with checkpoint file "Cooch_reactive_test_simple.h5".
HDF5-DIAG: Error detected in HDF5 (1.14.6) MPI-process 0:
#000: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5G.c line 437 in H5Gopen2(): unable to synchronously open group
major: Symbol table
minor: Unable to create file
#001: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5G.c line 399 in H5G__open_api_common(): unable to open group
major: Symbol table
minor: Can't open object
#002: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5VLcallback.c line 4354 in H5VL_group_open(): group open failed
major: Virtual Object Layer
minor: Can't open object
#003: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5VLcallback.c line 4321 in H5VL__group_open(): group open failed
major: Virtual Object Layer
minor: Can't open object
#004: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5VLnative_group.c line 153 in H5VL__native_group_open(): unable to open group
major: Symbol table
minor: Can't open object
#005: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5Gint.c line 380 in H5G__open_name(): group not found
major: Symbol table
minor: Object not found
#006: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5Gloc.c line 424 in H5G_loc_find(): can't find object
major: Symbol table
minor: Object not found
#007: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5Gtraverse.c line 824 in H5G_traverse(): internal path traversal failed
major: Symbol table
minor: Object not found
#008: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5Gtraverse.c line 596 in H5G__traverse_real(): traversal operator failed
major: Symbol table
minor: Callback failed
#009: /Users/inamdarlab/petsc/petsc/petsc/arch-darwin-c-debug/externalpackages/hdf5-hdf5_1.14.6/src/H5Gloc.c line 381 in H5G__loc_find_cb(): object 'Checkpoint' doesn't exist
major: Symbol table
minor: Object not found
ERROR: HDF5 Group "Checkpoint" not found.
Stopping!
WARNING! There are options you set that were not used!
WARNING! could be spelling mistake, etc!
There is one unused database option. It is:
Option left: name:-pflotranin value: Cooch_reactive_test_simple_v2_O2_test.in source: command line