PFLOTRAN MPI Initialization Error with HDF5
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Won Woo Yoon
Nov 25, 2024, 7:15:04 AM11/25/24
to pflotran-users
Hi all,
I'm trying to run PFLOTRAN on a cluster with 8 threads per node, utilizing SSH for communication between machines. I've verified that PFLOTRAN runs properly on all three machines independently and the connection between the machines via SSH without issues.
After then, I attempted the following command to utilize all nodes:
mpirun -n 24 -f /home/geofluids/hostfile $PFLOTRAN_DIR/src/pflotran/pflotran -input_prefix sample_197
The hostfile I used is
IP of machine1:8
IP of machine2:8
IP of machine3:8
Unfortunately, this returned an initialization error while creating the HDF5 file, with the error message starting as follows:
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 16:
#000: H5G.c line 231 in H5Gcreate2(): unable to synchronously create group
Since the complete error message is quite long, I’ve attached the as a .txt file for reference.
I would greatly appreciate any guidance or suggestions on how to resolve this issue.
Thank you in advance for your help!
Best regards,
Won Woo Yoon
Hammond, Glenn E
Nov 27, 2024, 5:58:57 PM11/27/24
to pflotra...@googlegroups.com
Won Woo,
I am unsure that to recommend. Can you send the file $PETSC_DIR/$PETSC_ARCH/lib/petsc/configure.log to pflotr...@googlegroups.com?
Glenn
From:
pflotra...@googlegroups.com <pflotra...@googlegroups.com> on behalf of Won Woo Yoon <yys...@yonsei.ac.kr>
Date: Monday, November 25, 2024 at 4:15 AM
To: pflotran-users <pflotra...@googlegroups.com>
Subject: [pflotran-users: 8155] PFLOTRAN MPI Initialization Error with HDF5
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Hammond, Glenn E
Dec 3, 2024, 11:37:01 AM12/3/24
to pflotra...@googlegroups.com
Won Woo,
You are running Ubuntu on a cluster (outside my expertise). I assume that the issue does not exist on a single node…. If you can replicate the issue on a PETSc test problem that employs HDF5, perhaps the PETSc developers can help. I assume that you have searched Google for answers…?
Glenn
From:
pflotra...@googlegroups.com <pflotra...@googlegroups.com> on behalf of Won Woo Yoon <yys...@yonsei.ac.kr>
Date: Monday, November 25, 2024 at 4:15 AM
To: pflotran-users <pflotra...@googlegroups.com>
Subject: [pflotran-users: 8155] PFLOTRAN MPI Initialization Error with HDF5
Check twice before you click! This email originated from outside PNNL.
Hi all,
--
Barry Smith
Dec 3, 2024, 7:48:23 PM12/3/24
to pflotran-users
The configure.log has no issues. Can you try running a HDF5 test code (there must be some distributed in the $PETSC_DIR/$PETSC_ARCH/externalpages/hdf5 directory) on exactly the same the same hosts with the same HDF5 libraries.
Won Woo Yoon
Dec 9, 2024, 9:02:41 PM12/9/24
to pflotra...@googlegroups.com
Thank you for your kind advice, and sorry for the late response.
I have identified some potential issues with the HDF5 installation version, but I have not yet had the chance to test a fix.
I plan to test it as soon as possible, and I will share an update if I am successful in resolving the issue.
Thank you once again for your valuable suggestions.
Best regards,
Won Woo Yoon
2024년 12월 4일 (수) 오전 9:48, Barry Smith <pets...@gmail.com>님이 작성:
To view this discussion visit https://groups.google.com/d/msgid/pflotran-users/116804f3-8d2d-4448-aa0f-eca210e99402n%40googlegroups.com.
laurin76....@gmail.com
May 8, 2025, 8:00:04 AMMay 8
to pflotran-users
Dear all,
I have the same issue on our cluster using a Debian 12 virtual machine. The issue seems to be caused by running the current version of pflotran / petsc on an input file that is located on a NFS-mounted disc. The error occurs during writing of the grid/mesh to the h5 output file (potentially as a separate process). The same installation works when running the input file on /tmp.
As an example, I use regression_tests/general/gas_injection.in with FORMAT HDF5 (removing FORMAT TECPLOT POINT and the skip/noskip keywords in OUTPUT).
Best regards,
Laurin
================================
PFLOTRAN Development Version
================================
"grid_structured_type" set to default value.
pflotran card:: NUMERICAL_METHODS
pflotran card:: REGRESSION
pflotran card:: GRID
pflotran card:: FLUID_PROPERTY
"FLUID_PROPERTY,diffusion_coefficient units" set to default value.
pflotran card:: MATERIAL_PROPERTY
Name :: soil
pflotran card:: MATERIAL_PROPERTY
Name :: impermeable
"MATERIAL_PROPERTY,ROCK_DENSITY units" set to default value.
"MATERIAL_PROPERTY,THERMAL_CONDUCTIVITY_DRY units" set to default value.
"MATERIAL_PROPERTY,THERMAL_CONDUCTIVITY_WET units" set to default value.
"MATERIAL_PROPERTY,HEAT_CAPACITY units" set to default value.
pflotran card:: CHARACTERISTIC_CURVES
Name :: cc1
WARNING: Mualem-van Genuchten relative permeability function is being used without SMOOTH option.
pflotran card:: CHARACTERISTIC_CURVES
Name :: cc2
WARNING: Mualem-van Genuchten relative permeability function is being used without SMOOTH option.
pflotran card:: OUTPUT
"OUTPUT,FORMAT,HDF5,# FILES" set to default value.
pflotran card:: TIME
pflotran card:: REGION
all
pflotran card:: REGION
top
pflotran card:: REGION
bottom
pflotran card:: REGION
impermeable_zone
pflotran card:: REGION
top_pt
pflotran card:: REGION
bottom_pt
pflotran card:: REGION
well_2
pflotran card:: OBSERVATION
pflotran card:: OBSERVATION
pflotran card:: FLOW_CONDITION
bottom_pressure
pflotran card:: FLOW_CONDITION
atmosphere
pflotran card:: FLOW_CONDITION
injection
pflotran card:: INITIAL_CONDITION
"Initial Condition name" set to default value.
pflotran card:: BOUNDARY_CONDITION
pflotran card:: BOUNDARY_CONDITION
pflotran card:: SOURCE_SINK
pflotran card:: SOURCE_SINK
pflotran card:: STRATA
pflotran card:: STRATA
pflotran card:: END_SUBSURFACE
Extent of Gridded Domain
X: 0.000000E+00 - 9.000000E+00
Y: 0.000000E+00 - 1.000000E+00
Z: 0.000000E+00 - 1.000000E+01
Size of Gridded Domain
Number of grid cells: 90
Min/Max Cell Volumes [m^3]
Maximum: 1.000000E+00
Minimum: 1.000000E+00
Number of active grid cells: 90
Number of inactive grid cells: 0
Default HDF5 method is used in Initialization
Beginning setup of FLOW SNES
number of dofs = 3, number of phases = 2
mode = General: p, sg/X, T
Finished setting up FLOW SNES
Requested processors and decomposition = 1, npx,y,z= -1 -1 -1
Actual decomposition: npx,y,z= 1 1 1
WARNING: Waypoint at time: 3.1536E+05 is beyond the end of simulation
WARNING: Waypoint at time: 1.5768E+07 is beyond the end of simulation
FLOW Time Stepper SNES
maximum number of steps: 999999
constant time steps threshold: 5
maximum number of cuts: 16
reduction factor: 5.000000E-01
maximum growth factor: 2.000000E+00
acceleration: on
acceleration threshold: 5
number of ramp entries: 5
ramp entry #1: 2.0000
ramp entry #2: 2.0000
ramp entry #3: 2.0000
ramp entry #4: 2.0000
ramp entry #5: 2.0000
ramp entry #6: 1.8000
ramp entry #7: 1.6000
ramp entry #8: 1.4000
ramp entry #9: 1.2000
ramp entry #10: 1.0000
ramp entry #11: 1.0000
ramp entry #12: 1.0000
ramp entry #13: 1.0000
FLOW Newton Solver
atol: 1.000000E-50
rtol: 1.000000E-08
stol: 1.000000E-08
dtol: 1.000000E+09
maxnorm: 1.000000E+20
inftolres: -9.990000E+02
inftolupd: -9.990000E+02
inftolrelupd: -9.990000E+02
inftolsclres: -9.990000E+02
max iter: 15
min iter: 1
maxf: 10000
matrix type: baij
precond. matrix type: baij
inexact newton: off
print convergence: on
print detailed convergence: off
check infinity norm: on
FLOW Linear Solver
solver: preonly
preconditioner: lu
atol: 1.000000E-50
rtol: 1.000000E-05
dtol: 1.000000E+04
maximum iteration: 10000
--> creating hdf5 output file: gas_injection.h5
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
0.05 Seconds to write HDF5 file.
Finished Initialization
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 7.88E-02 2x: 0.00E+00 2u: 0.00E+00 ir: 2.32E-02 iu: 0.00E+00 rsn: 0
1 2r: 5.56E-05 2x: 1.65E+06 2u: 3.62E+05 ir: 1.85E-05 iu: 8.34E+04 rsn: 0
2 2r: 3.43E-09 2x: 1.65E+06 2u: 1.29E+01 ir: 1.90E-09 iu: 3.86E+00 rsn: 999
Step 1 Time= 3.17098E-08 Dt= 3.17098E-08 [y] conv_reason: 999
newton = 2 [ 2] linear = 2 [ 2] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.342845E-08 0.380939E-10 0.189745E-08
--> max chng: dpl= 8.3360E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.5825E-09 dt= 5.9746E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 4.79E-03 2x: 0.00E+00 2u: 0.00E+00 ir: 9.76E-04 iu: 0.00E+00 rsn: 0
1 2r: 1.00E-06 2x: 1.53E+06 2u: 1.44E+05 ir: 3.63E-07 iu: 2.37E+04 rsn: 0
2 2r: 1.61E-10 2x: 1.53E+06 2u: 2.28E+00 ir: 5.24E-11 iu: 1.12E+00 rsn: 999
Step 2 Time= 9.51294E-08 Dt= 6.34196E-08 [y] conv_reason: 999
newton = 2 [ 4] linear = 2 [ 4] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.160785E-09 0.178650E-11 0.523837E-10
--> max chng: dpl= 2.3748E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 3.1649E-09 dt= 1.7027E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 9.53E-04 2x: 0.00E+00 2u: 0.00E+00 ir: 1.39E-04 iu: 0.00E+00 rsn: 0
1 2r: 1.83E-07 2x: 1.48E+06 2u: 5.67E+04 ir: 5.29E-08 iu: 1.25E+04 rsn: 0
2 2r: 8.53E-11 2x: 1.48E+06 2u: 2.56E+00 ir: 2.22E-11 iu: 2.47E+00 rsn: 999
Step 3 Time= 2.21969E-07 Dt= 1.26839E-07 [y] conv_reason: 999
newton = 2 [ 6] linear = 2 [ 6] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.853368E-10 0.948187E-12 0.221942E-10
--> max chng: dpl= 1.2535E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.3299E-09 dt= 5.9031E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.80E-04 2x: 0.00E+00 2u: 0.00E+00 ir: 2.41E-05 iu: 0.00E+00 rsn: 0
1 2r: 3.51E-08 2x: 1.46E+06 2u: 2.72E+04 ir: 2.53E-08 iu: 1.43E+04 rsn: 0
2 2r: 4.34E-11 2x: 1.46E+06 2u: 1.74E+00 ir: 1.14E-11 iu: 1.67E+00 rsn: 999
Step 4 Time= 4.75647E-07 Dt= 2.53678E-07 [y] conv_reason: 999
newton = 2 [ 8] linear = 2 [ 8] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.434191E-10 0.482434E-12 0.114132E-10
--> max chng: dpl= 1.4296E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.2660E-08 dt= 6.1651E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.11E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.26E-05 iu: 0.00E+00 rsn: 0
1 2r: 5.89E-09 2x: 1.46E+06 2u: 2.03E+04 ir: 3.98E-09 iu: 1.28E+04 rsn: 0
2 2r: 1.94E-11 2x: 1.46E+06 2u: 3.89E+00 ir: 5.55E-12 iu: 2.46E+00 rsn: 999
Step 5 Time= 1.00000E-06 Dt= 5.24353E-07 [y] conv_reason: 999
newton = 2 [ 10] linear = 2 [ 10] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.193517E-10 0.215019E-12 0.555270E-11
--> max chng: dpl= 1.2824E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.6168E-08 dt= 5.5304E-05 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.03 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 9.81E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 5.46E-06 iu: 0.00E+00 rsn: 0
1 2r: 1.26E-09 2x: 1.46E+06 2u: 7.93E+03 ir: 7.92E-10 iu: 5.41E+03 rsn: 0
2 2r: 2.28E-11 2x: 1.46E+06 2u: 7.22E-01 ir: 6.81E-12 iu: 6.61E-01 rsn: 999
Step 6 Time= 1.50736E-06 Dt= 5.07357E-07 [y] conv_reason: 999
newton = 2 [ 12] linear = 2 [ 12] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.228124E-10 0.253471E-12 0.681326E-11
--> max chng: dpl= 5.4123E+03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.5320E-08 dt= 2.3342E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.96E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 2.38E-06 iu: 0.00E+00 rsn: 0
1 2r: 4.15E-10 2x: 1.46E+06 2u: 4.07E+03 ir: 2.89E-10 iu: 2.94E+03 rsn: 0
2 2r: 9.58E-12 2x: 1.46E+06 2u: 2.56E-01 ir: 2.38E-12 iu: 2.48E-01 rsn: 999
Step 7 Time= 2.52207E-06 Dt= 1.01471E-06 [y] conv_reason: 999
newton = 2 [ 14] linear = 2 [ 14] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.957917E-11 0.106435E-12 0.237720E-11
--> max chng: dpl= 2.9432E+03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 5.0638E-08 dt= 1.2699E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.04E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 6.48E-07 iu: 0.00E+00 rsn: 0
1 2r: 9.77E-11 2x: 1.46E+06 2u: 1.20E+03 ir: 8.38E-11 iu: 9.08E+02 rsn: 0
2 2r: 5.25E-12 2x: 1.46E+06 2u: 3.00E-02 ir: 1.47E-12 iu: 2.77E-02 rsn: 999
Step 8 Time= 4.55150E-06 Dt= 2.02943E-06 [y] conv_reason: 999
newton = 2 [ 16] linear = 2 [ 16] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.524907E-11 0.583230E-13 0.147259E-11
--> max chng: dpl= 9.0790E+02 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.0127E-07 dt= 3.9293E-06 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.67E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.89E-11 2x: 1.46E+06 2u: 1.93E+02 ir: 1.17E-11 iu: 1.50E+02 rsn: 0
2 2r: 2.58E-12 2x: 1.46E+06 2u: 7.61E-03 ir: 6.55E-13 iu: 7.21E-03 rsn: 999
Step 9 Time= 8.61035E-06 Dt= 4.05885E-06 [y] conv_reason: 999
newton = 2 [ 18] linear = 2 [ 18] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.258017E-11 0.286685E-13 0.654514E-12
--> max chng: dpl= 1.4960E+02 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.0254E-07 dt= 7.7379E-06 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.21E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.25E-11 2x: 1.46E+06 2u: 1.34E+01 ir: 6.42E-12 iu: 1.06E+01 rsn: 0
2 2r: 7.53E-12 2x: 1.46E+06 2u: 6.77E-04 ir: 2.74E-12 iu: 6.11E-04 rsn: 999
Step 10 Time= 1.00000E-05 Dt= 1.38965E-06 [y] conv_reason: 999
newton = 2 [ 20] linear = 2 [ 20] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.753376E-11 0.837085E-13 0.274244E-11
--> max chng: dpl= 1.0567E+01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.9343E-08 dt= 2.6490E-06 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.02 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.27E-11 2x: 1.46E+06 2u: 3.28E+00 ir: 1.16E-11 iu: 2.61E+00 rsn: 0
2 2r: 1.38E-12 2x: 1.46E+06 2u: 6.17E-05 ir: 4.10E-13 iu: 5.41E-05 rsn: 999
Step 11 Time= 1.81177E-05 Dt= 8.11771E-06 [y] conv_reason: 999
newton = 2 [ 22] linear = 2 [ 22] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.138120E-11 0.153466E-13 0.409511E-12
--> max chng: dpl= 2.6133E+00 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 4.0503E-07 dt= 1.5461E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.01E-11 2x: 1.46E+06 2u: 1.40E-01 ir: 8.78E-12 iu: 1.13E-01 rsn: 0
2 2r: 6.69E-13 2x: 1.46E+06 2u: 1.12E-06 ir: 2.45E-13 iu: 1.07E-06 rsn: 999
Step 12 Time= 3.43531E-05 Dt= 1.62354E-05 [y] conv_reason: 999
newton = 2 [ 24] linear = 2 [ 24] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.668964E-12 0.743293E-14 0.244502E-12
--> max chng: dpl= 1.1253E-01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 8.0990E-07 dt= 3.0870E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.73E-11 2x: 1.46E+06 2u: 2.96E-03 ir: 1.53E-11 iu: 2.39E-03 rsn: 0
2 2r: 3.33E-13 2x: 1.46E+06 2u: 1.15E-07 ir: 1.12E-13 iu: 7.67E-08 rsn: 999
Step 13 Time= 6.68239E-05 Dt= 3.24708E-05 [y] conv_reason: 999
newton = 2 [ 26] linear = 2 [ 26] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.332582E-12 0.369536E-14 0.112347E-12
--> max chng: dpl= 2.3933E-03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.6192E-06 dt= 6.1531E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.19E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.61E-07 iu: 0.00E+00 rsn: 0
1 2r: 9.22E-12 2x: 1.46E+06 2u: 2.62E-04 ir: 5.95E-12 iu: 8.68E-05 rsn: 0
2 2r: 3.43E-13 2x: 1.46E+06 2u: 1.14E-07 ir: 1.38E-13 iu: 8.55E-08 rsn: 999
Step 14 Time= 1.00000E-04 Dt= 3.31761E-05 [y] conv_reason: 999
newton = 2 [ 28] linear = 2 [ 28] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.343172E-12 0.381302E-14 0.138061E-12
--> max chng: dpl= 8.6797E-05 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.6537E-06 dt= 6.2650E-05 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.03 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.19E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.61E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.15E-11 2x: 1.46E+06 2u: 5.27E-04 ir: 7.54E-12 iu: 1.70E-04 rsn: 0
2 2r: 1.80E-13 2x: 1.46E+06 2u: 2.82E-07 ir: 5.44E-14 iu: 9.13E-08 rsn: 999
Step 15 Time= 1.64942E-04 Dt= 6.49417E-05 [y] conv_reason: 999
newton = 2 [ 30] linear = 2 [ 30] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.180144E-12 0.200160E-14 0.543591E-13
--> max chng: dpl= 1.6976E-04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 3.2345E-06 dt= 1.2181E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.18E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.60E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.61E-11 2x: 1.46E+06 2u: 1.05E-03 ir: 1.45E-11 iu: 3.38E-04 rsn: 0
2 2r: 9.13E-14 2x: 1.46E+06 2u: 3.13E-07 ir: 2.29E-14 iu: 1.08E-07 rsn: 999
Step 16 Time= 2.94825E-04 Dt= 1.29883E-04 [y] conv_reason: 999
newton = 2 [ 32] linear = 2 [ 32] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.912858E-13 0.101429E-14 0.229379E-13
--> max chng: dpl= 3.3818E-04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.4589E-06 dt= 2.4037E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.16E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.57E-07 iu: 0.00E+00 rsn: 0
(0): State Transition: Liquid -> 2 Phase at Cell 5
1 2r: 1.02E-05 2x: 1.46E+06 2u: 2.09E-03 ir: 8.53E-06 iu: 6.71E-04 rsn: 0
2 2r: 9.09E-03 2x: 1.46E+06 2u: 1.49E+04 ir: 7.56E-03 iu: 1.49E+04 rsn: 0
3 2r: 6.26E-05 2x: 1.46E+06 2u: 1.41E+04 ir: 5.22E-05 iu: 1.41E+04 rsn: 0
4 2r: 6.58E-06 2x: 1.46E+06 2u: 2.30E+02 ir: 5.41E-06 iu: 2.30E+02 rsn: 0
5 2r: 2.96E-07 2x: 1.46E+06 2u: 3.20E+01 ir: 2.49E-07 iu: 3.20E+01 rsn: 0
6 2r: 1.12E-10 2x: 1.46E+06 2u: 9.03E-01 ir: 9.50E-11 iu: 9.02E-01 rsn: 0
7 2r: 4.92E-14 2x: 1.46E+06 2u: 3.70E-04 ir: 1.75E-14 iu: 3.69E-04 rsn: 999
Step 17 Time= 5.54592E-04 Dt= 2.59767E-04 [y] conv_reason: 999
newton = 7 [ 39] linear = 7 [ 39] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 7 / 7
--> SNES Residual: 0.491636E-13 0.546262E-15 0.175165E-13
--> max chng: dpl= 1.0579E+01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 9.1075E-06 dt= 3.4584E-04 dsg= 0.0000E+00
Dt limited by Unknown: Val=-9.990E+02, Gov=-9.990E+02, Scale=0.33
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 4.81E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 4.21E-06 iu: 0.00E+00 rsn: 0
1 2r: 2.45E-05 2x: 1.46E+06 2u: 2.56E+02 ir: 2.05E-05 iu: 2.56E+02 rsn: 0
2 2r: 6.29E-07 2x: 1.46E+06 2u: 5.70E+01 ir: 5.56E-07 iu: 5.69E+01 rsn: 0
3 2r: 2.39E-10 2x: 1.46E+06 2u: 1.42E+00 ir: 1.97E-10 iu: 4.88E-01 rsn: 999
Step 18 Time= 6.40315E-04 Dt= 8.57230E-05 [y] conv_reason: 999
newton = 3 [ 42] linear = 3 [ 42] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.238825E-09 0.265361E-11 0.197250E-09
--> max chng: dpl= 1.5220E+01 dpg= 1.9934E+02 dpa= 1.9934E+02
dxa= 4.3290E-06 dt= 1.6452E-04 dsg= 1.1431E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.24E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.10E-05 iu: 0.00E+00 rsn: 0
(0): State Transition: Liquid -> 2 Phase at Cell 14
(0): State Transition: Liquid -> 2 Phase at Cell 23
(0): State Transition: Liquid -> 2 Phase at Cell 32
1 2r: 1.22E-05 2x: 1.46E+06 2u: 8.30E+01 ir: 5.62E-06 iu: 8.04E+01 rsn: 0
2 2r: 9.57E-03 2x: 1.46E+06 2u: 1.86E+04 ir: 7.32E-03 iu: 1.81E+04 rsn: 0
3 2r: 8.02E-04 2x: 1.46E+06 2u: 1.76E+04 ir: 6.41E-04 iu: 1.71E+04 rsn: 0
4 2r: 2.26E-05 2x: 1.46E+06 2u: 1.66E+03 ir: 1.51E-05 iu: 1.65E+03 rsn: 0
5 2r: 4.69E-07 2x: 1.46E+06 2u: 5.98E+01 ir: 3.76E-07 iu: 5.40E+01 rsn: 0
6 2r: 5.93E-11 2x: 1.46E+06 2u: 1.53E+00 ir: 4.68E-11 iu: 1.47E+00 rsn: 0
7 2r: 6.11E-14 2x: 1.46E+06 2u: 3.85E-04 ir: 1.78E-14 iu: 3.67E-04 rsn: 999
Step 19 Time= 8.11761E-04 Dt= 1.71446E-04 [y] conv_reason: 999
newton = 7 [ 49] linear = 7 [ 49] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 7 / 7
--> SNES Residual: 0.611178E-13 0.679087E-15 0.178148E-13
--> max chng: dpl= 8.5318E+01 dpg= 1.0930E+02 dpa= 1.0930E+02
dxa= 4.2997E-06 dt= 1.6478E-04 dsg= 7.8605E-04
Dt limited by Unknown: Val=-9.990E+02, Gov=-9.990E+02, Scale=0.33
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.06E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.40E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.98E-05 2x: 1.46E+06 2u: 5.20E+02 ir: 1.30E-05 iu: 3.35E+02 rsn: 0
2 2r: 5.59E-08 2x: 1.46E+06 2u: 7.83E+01 ir: 3.43E-08 iu: 5.54E+01 rsn: 0
3 2r: 1.58E-12 2x: 1.46E+06 2u: 3.77E-01 ir: 1.23E-12 iu: 1.98E-01 rsn: 999
Step 20 Time= 8.68338E-04 Dt= 5.65772E-05 [y] conv_reason: 999
newton = 3 [ 52] linear = 3 [ 52] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.157505E-11 0.175006E-13 0.123061E-11
--> max chng: dpl= 8.5084E+01 dpg= 2.7950E+02 dpa= 2.7950E+02
dxa= 1.3241E-06 dt= 5.3423E-05 dsg= 1.2703E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.13E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.85E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.36E-05 2x: 1.46E+06 2u: 2.76E+02 ir: 1.00E-05 iu: 1.63E+02 rsn: 0
2 2r: 8.11E-09 2x: 1.46E+06 2u: 6.09E+01 ir: 6.52E-09 iu: 4.96E+01 rsn: 0
3 2r: 7.90E-12 2x: 1.46E+06 2u: 3.52E-01 ir: 6.29E-12 iu: 2.77E-01 rsn: 999
Step 21 Time= 9.81492E-04 Dt= 1.13154E-04 [y] conv_reason: 999
newton = 3 [ 55] linear = 3 [ 55] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.789906E-11 0.877673E-13 0.629101E-11
--> max chng: dpl= 7.7114E+01 dpg= 1.1317E+02 dpa= 1.1318E+02
dxa= 5.3300E-06 dt= 2.0918E-04 dsg= 1.5311E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.70E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.11E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.58E-07 2x: 1.46E+06 2u: 3.88E+01 ir: 1.15E-07 iu: 1.11E+01 rsn: 0
2 2r: 1.60E-12 2x: 1.46E+06 2u: 8.67E-01 ir: 1.13E-12 iu: 5.88E-01 rsn: 999
Step 22 Time= 1.00000E-03 Dt= 1.85080E-05 [y] conv_reason: 999
newton = 2 [ 57] linear = 2 [ 57] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.159526E-11 0.177251E-13 0.113206E-11
--> max chng: dpl= 1.3238E+01 dpg= 1.0497E+01 dpa= 1.0497E+01
dxa= 9.4334E-07 dt= 3.6966E-05 dsg= 2.2015E-04
--> appending to hdf5 output file: gas_injection.h5
0.02 Seconds to write HDF5 file.
PMCSubsurfaceFlow
Total Time: 5.5063E-02 seconds
FLOW TS SNES steps = 22 newton = 57 linear = 57 cuts = 0
FLOW TS SNES Wasted Linear Iterations = 0
FLOW TS SNES Wasted Newton Iterations = 0
FLOW TS SNES time = 0.1 seconds
--> write regression output file: gas_injection.regression
Wall Clock Time: 2.3398E-01 [sec] 3.8997E-03 [min] 6.4995E-05 [hr]
PFLOTRAN Development Version
================================
"grid_structured_type" set to default value.
pflotran card:: NUMERICAL_METHODS
pflotran card:: REGRESSION
pflotran card:: GRID
pflotran card:: FLUID_PROPERTY
"FLUID_PROPERTY,diffusion_coefficient units" set to default value.
pflotran card:: MATERIAL_PROPERTY
Name :: soil
pflotran card:: MATERIAL_PROPERTY
Name :: impermeable
"MATERIAL_PROPERTY,ROCK_DENSITY units" set to default value.
"MATERIAL_PROPERTY,THERMAL_CONDUCTIVITY_DRY units" set to default value.
"MATERIAL_PROPERTY,THERMAL_CONDUCTIVITY_WET units" set to default value.
"MATERIAL_PROPERTY,HEAT_CAPACITY units" set to default value.
pflotran card:: CHARACTERISTIC_CURVES
Name :: cc1
WARNING: Mualem-van Genuchten relative permeability function is being used without SMOOTH option.
pflotran card:: CHARACTERISTIC_CURVES
Name :: cc2
WARNING: Mualem-van Genuchten relative permeability function is being used without SMOOTH option.
pflotran card:: OUTPUT
"OUTPUT,FORMAT,HDF5,# FILES" set to default value.
pflotran card:: TIME
pflotran card:: REGION
all
pflotran card:: REGION
top
pflotran card:: REGION
bottom
pflotran card:: REGION
impermeable_zone
pflotran card:: REGION
top_pt
pflotran card:: REGION
bottom_pt
pflotran card:: REGION
well_2
pflotran card:: OBSERVATION
pflotran card:: OBSERVATION
pflotran card:: FLOW_CONDITION
bottom_pressure
pflotran card:: FLOW_CONDITION
atmosphere
pflotran card:: FLOW_CONDITION
injection
pflotran card:: INITIAL_CONDITION
"Initial Condition name" set to default value.
pflotran card:: BOUNDARY_CONDITION
pflotran card:: BOUNDARY_CONDITION
pflotran card:: SOURCE_SINK
pflotran card:: SOURCE_SINK
pflotran card:: STRATA
pflotran card:: STRATA
pflotran card:: END_SUBSURFACE
Extent of Gridded Domain
X: 0.000000E+00 - 9.000000E+00
Y: 0.000000E+00 - 1.000000E+00
Z: 0.000000E+00 - 1.000000E+01
Size of Gridded Domain
Number of grid cells: 90
Min/Max Cell Volumes [m^3]
Maximum: 1.000000E+00
Minimum: 1.000000E+00
Number of active grid cells: 90
Number of inactive grid cells: 0
Default HDF5 method is used in Initialization
Beginning setup of FLOW SNES
number of dofs = 3, number of phases = 2
mode = General: p, sg/X, T
Finished setting up FLOW SNES
Requested processors and decomposition = 1, npx,y,z= -1 -1 -1
Actual decomposition: npx,y,z= 1 1 1
WARNING: Waypoint at time: 3.1536E+05 is beyond the end of simulation
WARNING: Waypoint at time: 1.5768E+07 is beyond the end of simulation
FLOW Time Stepper SNES
maximum number of steps: 999999
constant time steps threshold: 5
maximum number of cuts: 16
reduction factor: 5.000000E-01
maximum growth factor: 2.000000E+00
acceleration: on
acceleration threshold: 5
number of ramp entries: 5
ramp entry #1: 2.0000
ramp entry #2: 2.0000
ramp entry #3: 2.0000
ramp entry #4: 2.0000
ramp entry #5: 2.0000
ramp entry #6: 1.8000
ramp entry #7: 1.6000
ramp entry #8: 1.4000
ramp entry #9: 1.2000
ramp entry #10: 1.0000
ramp entry #11: 1.0000
ramp entry #12: 1.0000
ramp entry #13: 1.0000
FLOW Newton Solver
atol: 1.000000E-50
rtol: 1.000000E-08
stol: 1.000000E-08
dtol: 1.000000E+09
maxnorm: 1.000000E+20
inftolres: -9.990000E+02
inftolupd: -9.990000E+02
inftolrelupd: -9.990000E+02
inftolsclres: -9.990000E+02
max iter: 15
min iter: 1
maxf: 10000
matrix type: baij
precond. matrix type: baij
inexact newton: off
print convergence: on
print detailed convergence: off
check infinity norm: on
FLOW Linear Solver
solver: preonly
preconditioner: lu
atol: 1.000000E-50
rtol: 1.000000E-05
dtol: 1.000000E+04
maximum iteration: 10000
--> creating hdf5 output file: gas_injection.h5
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
0.05 Seconds to write HDF5 file.
Finished Initialization
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 7.88E-02 2x: 0.00E+00 2u: 0.00E+00 ir: 2.32E-02 iu: 0.00E+00 rsn: 0
1 2r: 5.56E-05 2x: 1.65E+06 2u: 3.62E+05 ir: 1.85E-05 iu: 8.34E+04 rsn: 0
2 2r: 3.43E-09 2x: 1.65E+06 2u: 1.29E+01 ir: 1.90E-09 iu: 3.86E+00 rsn: 999
Step 1 Time= 3.17098E-08 Dt= 3.17098E-08 [y] conv_reason: 999
newton = 2 [ 2] linear = 2 [ 2] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.342845E-08 0.380939E-10 0.189745E-08
--> max chng: dpl= 8.3360E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.5825E-09 dt= 5.9746E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 4.79E-03 2x: 0.00E+00 2u: 0.00E+00 ir: 9.76E-04 iu: 0.00E+00 rsn: 0
1 2r: 1.00E-06 2x: 1.53E+06 2u: 1.44E+05 ir: 3.63E-07 iu: 2.37E+04 rsn: 0
2 2r: 1.61E-10 2x: 1.53E+06 2u: 2.28E+00 ir: 5.24E-11 iu: 1.12E+00 rsn: 999
Step 2 Time= 9.51294E-08 Dt= 6.34196E-08 [y] conv_reason: 999
newton = 2 [ 4] linear = 2 [ 4] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.160785E-09 0.178650E-11 0.523837E-10
--> max chng: dpl= 2.3748E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 3.1649E-09 dt= 1.7027E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 9.53E-04 2x: 0.00E+00 2u: 0.00E+00 ir: 1.39E-04 iu: 0.00E+00 rsn: 0
1 2r: 1.83E-07 2x: 1.48E+06 2u: 5.67E+04 ir: 5.29E-08 iu: 1.25E+04 rsn: 0
2 2r: 8.53E-11 2x: 1.48E+06 2u: 2.56E+00 ir: 2.22E-11 iu: 2.47E+00 rsn: 999
Step 3 Time= 2.21969E-07 Dt= 1.26839E-07 [y] conv_reason: 999
newton = 2 [ 6] linear = 2 [ 6] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.853368E-10 0.948187E-12 0.221942E-10
--> max chng: dpl= 1.2535E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.3299E-09 dt= 5.9031E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.80E-04 2x: 0.00E+00 2u: 0.00E+00 ir: 2.41E-05 iu: 0.00E+00 rsn: 0
1 2r: 3.51E-08 2x: 1.46E+06 2u: 2.72E+04 ir: 2.53E-08 iu: 1.43E+04 rsn: 0
2 2r: 4.34E-11 2x: 1.46E+06 2u: 1.74E+00 ir: 1.14E-11 iu: 1.67E+00 rsn: 999
Step 4 Time= 4.75647E-07 Dt= 2.53678E-07 [y] conv_reason: 999
newton = 2 [ 8] linear = 2 [ 8] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.434191E-10 0.482434E-12 0.114132E-10
--> max chng: dpl= 1.4296E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.2660E-08 dt= 6.1651E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.11E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.26E-05 iu: 0.00E+00 rsn: 0
1 2r: 5.89E-09 2x: 1.46E+06 2u: 2.03E+04 ir: 3.98E-09 iu: 1.28E+04 rsn: 0
2 2r: 1.94E-11 2x: 1.46E+06 2u: 3.89E+00 ir: 5.55E-12 iu: 2.46E+00 rsn: 999
Step 5 Time= 1.00000E-06 Dt= 5.24353E-07 [y] conv_reason: 999
newton = 2 [ 10] linear = 2 [ 10] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.193517E-10 0.215019E-12 0.555270E-11
--> max chng: dpl= 1.2824E+04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.6168E-08 dt= 5.5304E-05 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.03 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 9.81E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 5.46E-06 iu: 0.00E+00 rsn: 0
1 2r: 1.26E-09 2x: 1.46E+06 2u: 7.93E+03 ir: 7.92E-10 iu: 5.41E+03 rsn: 0
2 2r: 2.28E-11 2x: 1.46E+06 2u: 7.22E-01 ir: 6.81E-12 iu: 6.61E-01 rsn: 999
Step 6 Time= 1.50736E-06 Dt= 5.07357E-07 [y] conv_reason: 999
newton = 2 [ 12] linear = 2 [ 12] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.228124E-10 0.253471E-12 0.681326E-11
--> max chng: dpl= 5.4123E+03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.5320E-08 dt= 2.3342E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.96E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 2.38E-06 iu: 0.00E+00 rsn: 0
1 2r: 4.15E-10 2x: 1.46E+06 2u: 4.07E+03 ir: 2.89E-10 iu: 2.94E+03 rsn: 0
2 2r: 9.58E-12 2x: 1.46E+06 2u: 2.56E-01 ir: 2.38E-12 iu: 2.48E-01 rsn: 999
Step 7 Time= 2.52207E-06 Dt= 1.01471E-06 [y] conv_reason: 999
newton = 2 [ 14] linear = 2 [ 14] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.957917E-11 0.106435E-12 0.237720E-11
--> max chng: dpl= 2.9432E+03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 5.0638E-08 dt= 1.2699E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.04E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 6.48E-07 iu: 0.00E+00 rsn: 0
1 2r: 9.77E-11 2x: 1.46E+06 2u: 1.20E+03 ir: 8.38E-11 iu: 9.08E+02 rsn: 0
2 2r: 5.25E-12 2x: 1.46E+06 2u: 3.00E-02 ir: 1.47E-12 iu: 2.77E-02 rsn: 999
Step 8 Time= 4.55150E-06 Dt= 2.02943E-06 [y] conv_reason: 999
newton = 2 [ 16] linear = 2 [ 16] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.524907E-11 0.583230E-13 0.147259E-11
--> max chng: dpl= 9.0790E+02 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.0127E-07 dt= 3.9293E-06 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.67E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.89E-11 2x: 1.46E+06 2u: 1.93E+02 ir: 1.17E-11 iu: 1.50E+02 rsn: 0
2 2r: 2.58E-12 2x: 1.46E+06 2u: 7.61E-03 ir: 6.55E-13 iu: 7.21E-03 rsn: 999
Step 9 Time= 8.61035E-06 Dt= 4.05885E-06 [y] conv_reason: 999
newton = 2 [ 18] linear = 2 [ 18] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.258017E-11 0.286685E-13 0.654514E-12
--> max chng: dpl= 1.4960E+02 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 2.0254E-07 dt= 7.7379E-06 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.21E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.25E-11 2x: 1.46E+06 2u: 1.34E+01 ir: 6.42E-12 iu: 1.06E+01 rsn: 0
2 2r: 7.53E-12 2x: 1.46E+06 2u: 6.77E-04 ir: 2.74E-12 iu: 6.11E-04 rsn: 999
Step 10 Time= 1.00000E-05 Dt= 1.38965E-06 [y] conv_reason: 999
newton = 2 [ 20] linear = 2 [ 20] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.753376E-11 0.837085E-13 0.274244E-11
--> max chng: dpl= 1.0567E+01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.9343E-08 dt= 2.6490E-06 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.02 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.27E-11 2x: 1.46E+06 2u: 3.28E+00 ir: 1.16E-11 iu: 2.61E+00 rsn: 0
2 2r: 1.38E-12 2x: 1.46E+06 2u: 6.17E-05 ir: 4.10E-13 iu: 5.41E-05 rsn: 999
Step 11 Time= 1.81177E-05 Dt= 8.11771E-06 [y] conv_reason: 999
newton = 2 [ 22] linear = 2 [ 22] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.138120E-11 0.153466E-13 0.409511E-12
--> max chng: dpl= 2.6133E+00 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 4.0503E-07 dt= 1.5461E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.01E-11 2x: 1.46E+06 2u: 1.40E-01 ir: 8.78E-12 iu: 1.13E-01 rsn: 0
2 2r: 6.69E-13 2x: 1.46E+06 2u: 1.12E-06 ir: 2.45E-13 iu: 1.07E-06 rsn: 999
Step 12 Time= 3.43531E-05 Dt= 1.62354E-05 [y] conv_reason: 999
newton = 2 [ 24] linear = 2 [ 24] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.668964E-12 0.743293E-14 0.244502E-12
--> max chng: dpl= 1.1253E-01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 8.0990E-07 dt= 3.0870E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.20E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.62E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.73E-11 2x: 1.46E+06 2u: 2.96E-03 ir: 1.53E-11 iu: 2.39E-03 rsn: 0
2 2r: 3.33E-13 2x: 1.46E+06 2u: 1.15E-07 ir: 1.12E-13 iu: 7.67E-08 rsn: 999
Step 13 Time= 6.68239E-05 Dt= 3.24708E-05 [y] conv_reason: 999
newton = 2 [ 26] linear = 2 [ 26] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.332582E-12 0.369536E-14 0.112347E-12
--> max chng: dpl= 2.3933E-03 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.6192E-06 dt= 6.1531E-05 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.19E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.61E-07 iu: 0.00E+00 rsn: 0
1 2r: 9.22E-12 2x: 1.46E+06 2u: 2.62E-04 ir: 5.95E-12 iu: 8.68E-05 rsn: 0
2 2r: 3.43E-13 2x: 1.46E+06 2u: 1.14E-07 ir: 1.38E-13 iu: 8.55E-08 rsn: 999
Step 14 Time= 1.00000E-04 Dt= 3.31761E-05 [y] conv_reason: 999
newton = 2 [ 28] linear = 2 [ 28] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.343172E-12 0.381302E-14 0.138061E-12
--> max chng: dpl= 8.6797E-05 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 1.6537E-06 dt= 6.2650E-05 dsg= 0.0000E+00
--> appending to hdf5 output file: gas_injection.h5
0.03 Seconds to write HDF5 file.
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.19E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.61E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.15E-11 2x: 1.46E+06 2u: 5.27E-04 ir: 7.54E-12 iu: 1.70E-04 rsn: 0
2 2r: 1.80E-13 2x: 1.46E+06 2u: 2.82E-07 ir: 5.44E-14 iu: 9.13E-08 rsn: 999
Step 15 Time= 1.64942E-04 Dt= 6.49417E-05 [y] conv_reason: 999
newton = 2 [ 30] linear = 2 [ 30] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.180144E-12 0.200160E-14 0.543591E-13
--> max chng: dpl= 1.6976E-04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 3.2345E-06 dt= 1.2181E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.18E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.60E-07 iu: 0.00E+00 rsn: 0
1 2r: 1.61E-11 2x: 1.46E+06 2u: 1.05E-03 ir: 1.45E-11 iu: 3.38E-04 rsn: 0
2 2r: 9.13E-14 2x: 1.46E+06 2u: 3.13E-07 ir: 2.29E-14 iu: 1.08E-07 rsn: 999
Step 16 Time= 2.94825E-04 Dt= 1.29883E-04 [y] conv_reason: 999
newton = 2 [ 32] linear = 2 [ 32] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.912858E-13 0.101429E-14 0.229379E-13
--> max chng: dpl= 3.3818E-04 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 6.4589E-06 dt= 2.4037E-04 dsg= 0.0000E+00
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.16E-07 2x: 0.00E+00 2u: 0.00E+00 ir: 1.57E-07 iu: 0.00E+00 rsn: 0
(0): State Transition: Liquid -> 2 Phase at Cell 5
1 2r: 1.02E-05 2x: 1.46E+06 2u: 2.09E-03 ir: 8.53E-06 iu: 6.71E-04 rsn: 0
2 2r: 9.09E-03 2x: 1.46E+06 2u: 1.49E+04 ir: 7.56E-03 iu: 1.49E+04 rsn: 0
3 2r: 6.26E-05 2x: 1.46E+06 2u: 1.41E+04 ir: 5.22E-05 iu: 1.41E+04 rsn: 0
4 2r: 6.58E-06 2x: 1.46E+06 2u: 2.30E+02 ir: 5.41E-06 iu: 2.30E+02 rsn: 0
5 2r: 2.96E-07 2x: 1.46E+06 2u: 3.20E+01 ir: 2.49E-07 iu: 3.20E+01 rsn: 0
6 2r: 1.12E-10 2x: 1.46E+06 2u: 9.03E-01 ir: 9.50E-11 iu: 9.02E-01 rsn: 0
7 2r: 4.92E-14 2x: 1.46E+06 2u: 3.70E-04 ir: 1.75E-14 iu: 3.69E-04 rsn: 999
Step 17 Time= 5.54592E-04 Dt= 2.59767E-04 [y] conv_reason: 999
newton = 7 [ 39] linear = 7 [ 39] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 7 / 7
--> SNES Residual: 0.491636E-13 0.546262E-15 0.175165E-13
--> max chng: dpl= 1.0579E+01 dpg= 0.0000E+00 dpa= 0.0000E+00
dxa= 9.1075E-06 dt= 3.4584E-04 dsg= 0.0000E+00
Dt limited by Unknown: Val=-9.990E+02, Gov=-9.990E+02, Scale=0.33
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 4.81E-06 2x: 0.00E+00 2u: 0.00E+00 ir: 4.21E-06 iu: 0.00E+00 rsn: 0
1 2r: 2.45E-05 2x: 1.46E+06 2u: 2.56E+02 ir: 2.05E-05 iu: 2.56E+02 rsn: 0
2 2r: 6.29E-07 2x: 1.46E+06 2u: 5.70E+01 ir: 5.56E-07 iu: 5.69E+01 rsn: 0
3 2r: 2.39E-10 2x: 1.46E+06 2u: 1.42E+00 ir: 1.97E-10 iu: 4.88E-01 rsn: 999
Step 18 Time= 6.40315E-04 Dt= 8.57230E-05 [y] conv_reason: 999
newton = 3 [ 42] linear = 3 [ 42] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.238825E-09 0.265361E-11 0.197250E-09
--> max chng: dpl= 1.5220E+01 dpg= 1.9934E+02 dpa= 1.9934E+02
dxa= 4.3290E-06 dt= 1.6452E-04 dsg= 1.1431E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.24E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.10E-05 iu: 0.00E+00 rsn: 0
(0): State Transition: Liquid -> 2 Phase at Cell 14
(0): State Transition: Liquid -> 2 Phase at Cell 23
(0): State Transition: Liquid -> 2 Phase at Cell 32
1 2r: 1.22E-05 2x: 1.46E+06 2u: 8.30E+01 ir: 5.62E-06 iu: 8.04E+01 rsn: 0
2 2r: 9.57E-03 2x: 1.46E+06 2u: 1.86E+04 ir: 7.32E-03 iu: 1.81E+04 rsn: 0
3 2r: 8.02E-04 2x: 1.46E+06 2u: 1.76E+04 ir: 6.41E-04 iu: 1.71E+04 rsn: 0
4 2r: 2.26E-05 2x: 1.46E+06 2u: 1.66E+03 ir: 1.51E-05 iu: 1.65E+03 rsn: 0
5 2r: 4.69E-07 2x: 1.46E+06 2u: 5.98E+01 ir: 3.76E-07 iu: 5.40E+01 rsn: 0
6 2r: 5.93E-11 2x: 1.46E+06 2u: 1.53E+00 ir: 4.68E-11 iu: 1.47E+00 rsn: 0
7 2r: 6.11E-14 2x: 1.46E+06 2u: 3.85E-04 ir: 1.78E-14 iu: 3.67E-04 rsn: 999
Step 19 Time= 8.11761E-04 Dt= 1.71446E-04 [y] conv_reason: 999
newton = 7 [ 49] linear = 7 [ 49] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 7 / 7
--> SNES Residual: 0.611178E-13 0.679087E-15 0.178148E-13
--> max chng: dpl= 8.5318E+01 dpg= 1.0930E+02 dpa= 1.0930E+02
dxa= 4.2997E-06 dt= 1.6478E-04 dsg= 7.8605E-04
Dt limited by Unknown: Val=-9.990E+02, Gov=-9.990E+02, Scale=0.33
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 2.06E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.40E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.98E-05 2x: 1.46E+06 2u: 5.20E+02 ir: 1.30E-05 iu: 3.35E+02 rsn: 0
2 2r: 5.59E-08 2x: 1.46E+06 2u: 7.83E+01 ir: 3.43E-08 iu: 5.54E+01 rsn: 0
3 2r: 1.58E-12 2x: 1.46E+06 2u: 3.77E-01 ir: 1.23E-12 iu: 1.98E-01 rsn: 999
Step 20 Time= 8.68338E-04 Dt= 5.65772E-05 [y] conv_reason: 999
newton = 3 [ 52] linear = 3 [ 52] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.157505E-11 0.175006E-13 0.123061E-11
--> max chng: dpl= 8.5084E+01 dpg= 2.7950E+02 dpa= 2.7950E+02
dxa= 1.3241E-06 dt= 5.3423E-05 dsg= 1.2703E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 3.13E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.85E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.36E-05 2x: 1.46E+06 2u: 2.76E+02 ir: 1.00E-05 iu: 1.63E+02 rsn: 0
2 2r: 8.11E-09 2x: 1.46E+06 2u: 6.09E+01 ir: 6.52E-09 iu: 4.96E+01 rsn: 0
3 2r: 7.90E-12 2x: 1.46E+06 2u: 3.52E-01 ir: 6.29E-12 iu: 2.77E-01 rsn: 999
Step 21 Time= 9.81492E-04 Dt= 1.13154E-04 [y] conv_reason: 999
newton = 3 [ 55] linear = 3 [ 55] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 3 / 3
--> SNES Residual: 0.789906E-11 0.877673E-13 0.629101E-11
--> max chng: dpl= 7.7114E+01 dpg= 1.1317E+02 dpa= 1.1318E+02
dxa= 5.3300E-06 dt= 2.0918E-04 dsg= 1.5311E-03
== GENERAL MULTIPHASE FLOW =====================================================
0 2r: 1.70E-05 2x: 0.00E+00 2u: 0.00E+00 ir: 1.11E-05 iu: 0.00E+00 rsn: 0
1 2r: 1.58E-07 2x: 1.46E+06 2u: 3.88E+01 ir: 1.15E-07 iu: 1.11E+01 rsn: 0
2 2r: 1.60E-12 2x: 1.46E+06 2u: 8.67E-01 ir: 1.13E-12 iu: 5.88E-01 rsn: 999
Step 22 Time= 1.00000E-03 Dt= 1.85080E-05 [y] conv_reason: 999
newton = 2 [ 57] linear = 2 [ 57] cuts = 0 [ 0]
--> SNES Linear/Non-Linear Iterations = 2 / 2
--> SNES Residual: 0.159526E-11 0.177251E-13 0.113206E-11
--> max chng: dpl= 1.3238E+01 dpg= 1.0497E+01 dpa= 1.0497E+01
dxa= 9.4334E-07 dt= 3.6966E-05 dsg= 2.2015E-04
--> appending to hdf5 output file: gas_injection.h5
0.02 Seconds to write HDF5 file.
PMCSubsurfaceFlow
Total Time: 5.5063E-02 seconds
FLOW TS SNES steps = 22 newton = 57 linear = 57 cuts = 0
FLOW TS SNES Wasted Linear Iterations = 0
FLOW TS SNES Wasted Newton Iterations = 0
FLOW TS SNES time = 0.1 seconds
--> write regression output file: gas_injection.regression
Wall Clock Time: 2.3398E-01 [sec] 3.8997E-03 [min] 6.4995E-05 [hr]
Hammond, Glenn E
May 13, 2025, 11:49:13 AMMay 13
to pflotra...@googlegroups.com
Laurin,
Sorry for the delayed response. Have you compared the permissions on both directories (and the hierarchy of directories above the local directory on the NFS-mounted disk? I suspect that this is a permissions issue.
Glenn
To view this discussion visit https://groups.google.com/d/msgid/pflotran-users/0f274135-4d15-49ed-b038-1850509e6a35n%40googlegroups.com.
laurin76....@gmail.com
May 22, 2025, 6:48:01 AMMay 22
to pflotran-users
Dear Glen,
We compared and checked permissions, without success.
I reinstalled PFLOTRAN maint/v5.0 with PETSC 3.20.0 at the exact same location and the example "general/gas_injection.in with HDF5 OUTPUT" works fine.
The issue with the latest version (PFLOTRAN v6.0 with PETSC 3.21.5) seems to be the writing of the mesh/grid to hdf5 by the MPI process 0. The rest of the results is written ok.
Please note that the error message appears near the top of the screen output (not the output file), when the mesh is written to hdf5.
I am on Debian 12.11.
I have given the error message to ChatGPT (apologies for my ignorance) and the answer sounds quite plausible (as always):
- NFS lacks robust support for MPI_File_sync, which is required in some cases by the ROMIO MPI-IO implementation (used by MPICH/OpenMPI).
- Parallel HDF5 uses MPI-IO under the hood. If you’re doing independent I/O (not collective), and the driver decides that MPI_File_sync() is required, it will fail on NFS.
- This is an issue with HDF5 1.14.x and newer ROMIO implementations, which have become stricter.
Thanks a lot for your help!
Laurin
HDF5-DIAG: Error detected in HDF5 (1.14.3) MPI-process 0:
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
#000: H5D.c line 1371 in H5Dwrite(): can't synchronously write data
major: Dataset
minor: Write failed
#001: H5D.c line 1317 in H5D__write_api_common(): can't write data
major: Dataset
minor: Write failed
#002: H5VLcallback.c line 2282 in H5VL_dataset_write_direct(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#003: H5VLcallback.c line 2237 in H5VL__dataset_write(): dataset write failed
major: Virtual Object Layer
minor: Write failed
#004: H5VLnative_dataset.c line 420 in H5VL__native_dataset_write(): can't write data
major: Dataset
minor: Write failed
#005: H5Dio.c line 744 in H5D__write(): unable to adjust I/O info for parallel or selection I/O
major: Dataset
minor: Unable to initialize object
#006: H5Dio.c line 1296 in H5D__ioinfo_adjust(): Can't perform independent write when MPI_File_sync is required by ROMIO driver.
major: Dataset
minor: Can't perform independent IO
Hammond, Glenn E
May 28, 2025, 8:09:59 PMMay 28
to pflotra...@googlegroups.com
Laurin,
Please send the configure.log for PETSc 3.20.0 to pflotr...@googlegroups.com. I want to see which HDF5 version PETSc installs.
The correct syntax is in place for independent I/O:
which leads me to believe that the issue is HDF5 1.14.x with ROMIO, the last bullet that ChatGPT reports.
Thanks,
Glenn
To view this discussion visit https://groups.google.com/d/msgid/pflotran-users/1f2a4328-4834-4a37-b419-63f353e33236n%40googlegroups.com.
laurin76....@gmail.com
Jun 6, 2025, 3:31:37 AMJun 6
to pflotran-users
Hi Glenn,
The hdf5 version of petsc 2.20.0 seems to be hdf5-1.12.2.
I just sent the configure.log.
Thanks,
Laurin
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