Microbial reaction rate output

[Susan Pit]

Hi all,

I'm trying to figure out how to get depth dependent reaction rate output for microbial reactions. I've seen some documentation on that for mineral kinetics, but I'm a little lost on how to do that for microbial reactions. I'm aiming to make plots like below, any suggestions?

Thank you!

Cheers,

Susan

[Susan Pit]

Here's a link to the image: https://encrypted-tbn0.gstatic.com/images?q=tbn:ANd9GcR7e6ZmipjhSnTqQw2XlzN5D6EPD1eK9Go49A&s

[Hammond, Glenn E]

Susan,

 

PFLOTRAN does not store the rates for microbial reactions (or to my recollection other reactions other than mineral precipitation-dissolution reactions). A workaround would be hack the code and print the rates to the screen, capturing screen output in a file and then parsing the file for the values. A little bit of work, but possible.

 

The rates are calculated at:

https://bitbucket.org/pflotran/pflotran/src/b0098652ec04134f120328c0604fa0722109d19a/src/pflotran/reaction_microbial.F90#lines-391

but you lack the cell id info.

 

If you call in during office hours, we could attempt to hack the code during that meeting.

 

Glenn

 

 

From: 'Susan Pit' via pflotran-users <pflotra...@googlegroups.com>
Date: Friday, May 9, 2025 at 2:54 PM
To: pflotran-users <pflotra...@googlegroups.com>
Subject: [pflotran-users: 8391] Re: Microbial reaction rate output

Check twice before you click! This email originated from outside PNNL.

 

 

Thank you!

 

Cheers,

Susan

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