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Paulo Herrera
Jul 23
Error while compiling PFLOTRAN with standard Linux packages
Hello everyone, I am new to this list. I have been running PFLOTRAN in Amazon AWS with success during
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Error while compiling PFLOTRAN with standard Linux packages
Hello everyone, I am new to this list. I have been running PFLOTRAN in Amazon AWS with success during
Jul 23
Lucien Stolze
,
Hammond, Glenn E
2
Jul 22
Issues with time series data file
Lucien, Please see my comments in red below. Glenn From: pflotr...@googlegroups.com <pflotran-
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Issues with time series data file
Lucien, Please see my comments in red below. Glenn From: pflotr...@googlegroups.com <pflotran-
Jul 22
Hammond, Glenn E
Jul 18
Side effects due to updates to PETSc
All, Recent updates to PETSc necessitate a fairly comprehensive refactor of PFLOTRAN. For example: 1.
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Side effects due to updates to PETSc
All, Recent updates to PETSc necessitate a fairly comprehensive refactor of PFLOTRAN. For example: 1.
Jul 18
오신성
,
Park, Heeho Daniel
2
Jul 17
I would like to evaluate more than 50 radionuclides.
Hi Shinsung, It could be as simple as increasing the limit (k>50) to a different number and
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I would like to evaluate more than 50 radionuclides.
Hi Shinsung, It could be as simple as increasing the limit (k>50) to a different number and
Jul 17
Madelaine Griesel
,
Hammond, Glenn E
9
Jul 17
PETSc Segmentation Violation Error
Madelaine, I tried configuring similar to what is reported in your configure.log. The main
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PETSc Segmentation Violation Error
Madelaine, I tried configuring similar to what is reported in your configure.log. The main
Jul 17
Madelaine Griesel
Jul 3
PETSc Configuration Log
Hello, Attached is the configuration log from my $PETSC_DIR/$PETSC_ARCH/lib/petsc/conf/configure.log
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PETSc Configuration Log
Hello, Attached is the configuration log from my $PETSC_DIR/$PETSC_ARCH/lib/petsc/conf/configure.log
Jul 3
Kewei Chen
May 15
Fwd: [pflotran-users: 7742] 2023 Publications
Hi Glenn, Here are my publications that employ PFLOTRAN: Chen, K., Xingyuan Chen, James C. Stegen,
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Fwd: [pflotran-users: 7742] 2023 Publications
Hi Glenn, Here are my publications that employ PFLOTRAN: Chen, K., Xingyuan Chen, James C. Stegen,
May 15
Hammond, Glenn E
2
Apr 18
Timing of Bi-Weekly PFLOTRAN Development Telecon
Last call on availability. If you would like to remain informed and provide input on PFLOTRAN
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Timing of Bi-Weekly PFLOTRAN Development Telecon
Last call on availability. If you would like to remain informed and provide input on PFLOTRAN
Apr 18
Nikolas Ovaskainen
,
Hammond, Glenn E
2
Apr 12
Packaging of plotfran with nix
Nikolas, Thank you for reaching out. I have never heard of nix, but worth looking into. Most of our
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Packaging of plotfran with nix
Nikolas, Thank you for reaching out. I have never heard of nix, but worth looking into. Most of our
Apr 12
David Fukuyama
Apr 11
Checkpoint file primary variable question
Hi all, I have a question about the mapping of Primary_Variables that are output in checkpoint files.
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Checkpoint file primary variable question
Hi all, I have a question about the mapping of Primary_Variables that are output in checkpoint files.
Apr 11
Jens Eckel
,
Hammond, Glenn E
5
Mar 8
Degradation of a seal
Thank you, Glenn. I will try to understand what needs to be implemented to realize this feature. Best
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Degradation of a seal
Thank you, Glenn. I will try to understand what needs to be implemented to realize this feature. Best
Mar 8
Mahzari, Pedram
, …
pedram mahzari
10
Mar 6
Re: unstructured mesh generated by vorocrust
Hi Glenn, Apologies for not checking this group. I removed the dodgy connections and now, the model
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Re: unstructured mesh generated by vorocrust
Hi Glenn, Apologies for not checking this group. I removed the dodgy connections and now, the model
Mar 6
Chuyang Liu
Feb 28
ParMETIS_V3_Mesh2Dual error
Hi there, Many thanks for the help in advance. Since I did not have access to Perlmutter. Please find
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ParMETIS_V3_Mesh2Dual error
Hi there, Many thanks for the help in advance. Since I did not have access to Perlmutter. Please find
Feb 28
Collin Wang
,
Hammond, Glenn E
2
Feb 26
configure log file
Collin, What output do you get from the following command: $ nm -o *.a | grep -i h5pset_dxpl_mpio_f
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configure log file
Collin, What output do you get from the following command: $ nm -o *.a | grep -i h5pset_dxpl_mpio_f
Feb 26
Collin Wang
,
Hammond, Glenn E
2
Feb 23
PFLOTRAN installation help
Collin, Let's try a coupling things: Please configure with “./configure --CFLAGS='-O3' --
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PFLOTRAN installation help
Collin, Let's try a coupling things: Please configure with “./configure --CFLAGS='-O3' --
Feb 23
Jianwen Du
,
Hammond, Glenn E
2
Feb 21
[pflotran-users:7492] Keq error in General mode
Jianwen, I suspect that the issue is the use of gfortran 4.8.x. Yes, it is Fortran 2003/2008
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[pflotran-users:7492] Keq error in General mode
Jianwen, I suspect that the issue is the use of gfortran 4.8.x. Yes, it is Fortran 2003/2008
Feb 21
Hammond, Glenn E
,
Fukuyama, David Erik
2
Feb 2
Rebase of david/multi-soluble-material
Thanks Glenn! From: 'Hammond, Glenn E' via pflotran-dev <pflotr...@googlegroups.com>
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Rebase of david/multi-soluble-material
Thanks Glenn! From: 'Hammond, Glenn E' via pflotran-dev <pflotr...@googlegroups.com>
Feb 2
Hammond, Glenn E
Jan 31
Unit tests
Devs, Units tests are failing locally and in GitLab CI, but CI is not catching it. I plan to fix this
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Unit tests
Devs, Units tests are failing locally and in GitLab CI, but CI is not catching it. I plan to fix this
Jan 31
David Fukuyama
,
Hammond, Glenn E
3
Jan 5
GENERAL mode diffusion conditional question
Thanks Glenn. Are there any special cases that the geometric mean catches that the other conditional
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GENERAL mode diffusion conditional question
Thanks Glenn. Are there any special cases that the geometric mean catches that the other conditional
Jan 5
Jens Eckel
,
Hammond, Glenn E
5
12/15/23
Regression Tests
Hi Glenn, at the moment tortuosity is not expected to change over time, but maybe eq. 32 can also be
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Regression Tests
Hi Glenn, at the moment tortuosity is not expected to change over time, but maybe eq. 32 can also be
12/15/23
Jens Eckel
,
Hammond, Glenn E
4
11/27/23
Diffusive transport under grid rotation
Jens, For structured grids, the COORDINATE (whether a point, plane or box) designates the cell id and
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Diffusive transport under grid rotation
Jens, For structured grids, the COORDINATE (whether a point, plane or box) designates the cell id and
11/27/23
Hammond, Glenn E
10/31/23
Copyright Assertion
Devs, PNNL recently asserted copyright on the PFLOTRAN v5.0 source code, just like LANL did with v2.0
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Copyright Assertion
Devs, PNNL recently asserted copyright on the PFLOTRAN v5.0 source code, just like LANL did with v2.0
10/31/23
Alejandro Fernández
, …
Hammond, Glenn E
6
9/26/23
Basic question: what is the correspondence between cell ID's and grid positions?
Dear Glenn, Thank you for your addition, I will continue working on this! Cheers, Alejandro On Mon,
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Basic question: what is the correspondence between cell ID's and grid positions?
Dear Glenn, Thank you for your addition, I will continue working on this! Cheers, Alejandro On Mon,
9/26/23
Ovaskainen Nikolas (GTK)
,
Hammond, Glenn E
2
8/16/23
Build problem of pflotran using the nix package manager
Nikolas, I have no experience with nix, and I do not know of any PETSc users who have used it. Did
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Build problem of pflotran using the nix package manager
Nikolas, I have no experience with nix, and I do not know of any PETSc users who have used it. Did
8/16/23
Peter Lichtner
7/21/23
Fwd: Users manual: CONVERGENCE_INFO
In EXAMPLES under NUMERICAL_METHODS in the PFLOTRAN user manual appears the following: NEWTON_SOLVER
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Fwd: Users manual: CONVERGENCE_INFO
In EXAMPLES under NUMERICAL_METHODS in the PFLOTRAN user manual appears the following: NEWTON_SOLVER
7/21/23
Runjian Wu
, …
Hammond, Glenn E
4
7/14/23
iface range
The issue that I see is that we are looping over cell faces, but the zeroth entry in %cell_vertices
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iface range
The issue that I see is that we are looping over cell faces, but the zeroth entry in %cell_vertices
7/14/23
Hammond, Glenn E
7/3/23
Running out of disk space on GitLab runners
Heeho/Calvin, I have been researching the issue of running out of disk space this afternoon. We are
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Running out of disk space on GitLab runners
Heeho/Calvin, I have been researching the issue of running out of disk space this afternoon. We are
7/3/23
Runjian Wu
,
Hammond, Glenn E
4
7/3/23
print_initial_massbal
When MASS_BALANCE is included in the OUTPUT block, the initial and final masses are included in the -
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print_initial_massbal
When MASS_BALANCE is included in the OUTPUT block, the initial and final masses are included in the -
7/3/23
PEGGY NGUYEN
,
Hammond, Glenn E
4
6/12/23
Kryptonite Exercise Question
Peggy, Please send the entire input file. Otherwise, we cannot replicate the error. Glenn From:
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Kryptonite Exercise Question
Peggy, Please send the entire input file. Otherwise, we cannot replicate the error. Glenn From:
6/12/23
Runjian Wu
6/1/23
Combine Residual and Jacobian subroutines
Hi all devs, I found RichardsFluxDerivative() has the same capability to compute the flux with
unread,
Combine Residual and Jacobian subroutines
Hi all devs, I found RichardsFluxDerivative() has the same capability to compute the flux with
6/1/23