PEtab with model formats other than SBML - Call for Votes

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froehlichfab

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Jan 31, 2023, 8:56:06 AM1/31/23

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Dear PEtab community,

On March 18th 2022, we requested feedback on a proposal to change the PEtab format to support models in formats other than SBML. This will make PEtab more versatile in the future. At this point in time the editors would like for your vote on whether to incorporate it into the language:

https://docs.google.com/forms/d/e/1FAIpQLSeSqvJBg7mOpNf982Qp-J5UPiKYgeExs-YMVpmePSPr3Nh-5w/viewform

The voting period ends at midnight CET on February 15th 2023.

You can find the details about the proposed changes to the PEtab format in this PR: https://github.com/PEtab-dev/PEtab/pull/538

You can find the details about the proposed changes to the PEtab library in this PR: https://github.com/PEtab-dev/libpetab-python/pull/145

You can find the details about the proposed changes to the PEtab testsuite in this PR: https://github.com/PEtab-dev/petab_test_suite/pull/53

You can find a reference implementation for support of pysb models in this PR: https://github.com/AMICI-dev/AMICI/pull/1800

Independent of your vote, please feel free to give feedback to any of these pull-requests on GitHub.

Thank you for your consideration!

Fabian Fröhlich,

on behalf of the PEtab editors

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