Data Availability of Single Cell Portal

[Atray Dixit]

We haven't been able to correct the typo in the URL, but the BMDC data is now available through the Broad Institute's Single Cell Portal:

https://portals.broadinstitute.org/single_cell/

You can look at the expression of particular genes, and, as the software evolves, should be able to stratify by perturbation as well

[ricard.a...@gmail.com]

Hello,

I am trying to take a look at the expression data but seems to be unavailable from the portal. I get a 404 error for every file I try to download in "Download perturb-seq data" tab. 

Could you please check?

Alternatively, where can I get the expression matrix for BMDC data? the file GSE90063_dc3hr_umi_wt.txt seems to the job but it has very small number of samples. Why is that?

Thank you,

Ricard.

[Timothy Tickle]

Hello Richard,

Everything should be working now, please let me know if there is anything else you need.

Cordially,

Tim

[Atray Dixit]

GSE90063_dc3hr_umi_wt.txt only contains data from unperturbed cells