Please Disregard.
I realize now that i am trying to compare queries that take 3-10
Minutes to execute and its actually running in the background.
Tool will probably work if just wait long enough.
I used some smaller queries that take < 1 minute an the tool is
working great.
Significant query time differences
# Query ID host1:3306 host2:3306 %Increase %Threshold
# ================== ================ ================ =========
==========
# E252E33DFDCED0DE-1 17s 29s
70.59 1
Percona instance is much faster for this particular query.
Thanks,