Fwd: Percolator 2.04

[Lukas Kall]

Dear percolator-user:

We just released version 2.04 of percolator, which is available from https://github.com/percolator/percolator/downloads

Here is an extract from the changelog file :

v2.04
* Incorporated new version of Fido to estimate Protein Probabilities
* Added new parameters to use when estimating Protein Probabilities :
-a (--alpha) 
-b (--beta)
-G (--gamma)
   -N (--group-proteins)
        -D (--no-prune-proteins)
        -P (--deepness)
* Added information to the pout file:
-Number of PSMs,peptides and Proteins below at FDR 1%.
-Pi0s calculated at PSM, peptide and protein level.
-alpha,beta and gamma values for Fido.
* Corrected an error in the selection process of the highest

  scoring PSM for each peptide.

Best Regards
-José and Lukas