Nothing will happen until you replace that banjo bolt. Can you get the stub out of the injector?
You said the engine was hot, but not scalding?
How hot? Do you think it overheated?
The engine originally stalled?
Due to low oil pressure or overheat?
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Based on your detailed description, the Yanmar 2GM20F engine starts and runs on cylinder #2 alone, but stalls or won’t run when cylinder #1 is allowed to compress. That strongly suggests that cylinder #1 is introducing a mechanical or combustion problem that actively interferes with engine operation.
Here’s a breakdown of likely causes:
Fuel system bled, fuel reaching injectors
Engine runs on cylinder #2 alone
Adding compression to cylinder #1 kills the engine
Cylinder #1 cannot run the engine alone
If the exhaust valve isn't closing properly, or the timing is off, cylinder #1 may:
Build little or no compression
Cause a reverse pressure pulse in the intake or exhaust
Act like a "brake" when allowed to compress
👉 Clue: Since the decompression lever lifts the exhaust valve, a stuck-open exhaust valve (or one that’s not sealing) could let the engine run when lifted — but choke it when forced to seal.
Check:
Valve lash/clearance on cylinder #1
Rocker arm, pushrod, valve spring integrity
Bent valve or worn cam lobe
If cylinder #1 has very poor compression due to:
Worn piston rings
Broken ring
Scored cylinder wall
…it won’t contribute power and may create drag when compressed.
👉 If compression is very low, the engine won't fire that cylinder — but now has to work against its resistance.
Test:
Do a compression test or leak-down test on both cylinders.
If compression on #1 is much lower, that’s your issue.
Even if fuel reaches the injector, the nozzle may be:
Clogged
Dripping (not atomizing)
Not firing at correct timing or pressure
This can cause misfiring or fuel wash, contributing to loss of power and even stalling when the cylinder loads the engine.
Test:
Swap injector #1 with injector #2 and see if the problem follows the injector.
If cylinder #1 has:
A bent connecting rod
A damaged piston crown
Or timing gear damage, it may allow it to move but not contribute power — or worse, resist it.
This is less likely than valve or injector issues but possible if the engine overheated or hydro-locked previously.
Check valve lash and verify the valve train moves freely.
Run a compression test on both cylinders.
If compression is low on #1, do a leak-down test to isolate valve vs ring issue.
Swap injectors to rule out injector failure.
Inspect the pushrods, rockers, and valve springs on cylinder #1.
The fact that enabling compression on cylinder #1 kills the engine points to a mechanical or combustion fault in that cylinder — most likely a valve issue or very poor compression, not just a fuel delivery problem.
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I think Id pull the valve covers and see whats going on. Turn the engine over slowly and make sure things are moving properly.
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