Importing Bruker MALDI TOF/TOF data in peaks
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B@rtenB
Nov 10, 2009, 4:15:58 AM11/10/09
to PEAKS_forum
Dear all,
I can't import raw data from a Bruker ultraflex II tof/tof instrument
directly in to peaks.
I always have to create peaklists in flex analysis, and import those,
but this means two algorhytms processing the same data, and so some
can be lost + it takes me double the time to analyse my spectra.
all help is welcome,
best regards,
Bart
I can't import raw data from a Bruker ultraflex II tof/tof instrument
directly in to peaks.
I always have to create peaklists in flex analysis, and import those,
but this means two algorhytms processing the same data, and so some
can be lost + it takes me double the time to analyse my spectra.
all help is welcome,
best regards,
Bart
Lynette
Nov 10, 2009, 9:25:42 AM11/10/09
to PEAKS_forum
Dear Bart,
Try checking your Bruker settings in PEAKS by going to preferences ->
Instrument -> Bruker. Ensure that the Default Compass File Location is
correct or if it is blank, browse to the correct location of
CompassXport.exe. Also, make sure that the correct raw file convertor
option is selected. Let me know if any of these suggestions helped.
You can email me at ll...@bioinfor.com if you need further assistance.
Best Regards,
Lynette Lau
Try checking your Bruker settings in PEAKS by going to preferences ->
Instrument -> Bruker. Ensure that the Default Compass File Location is
correct or if it is blank, browse to the correct location of
CompassXport.exe. Also, make sure that the correct raw file convertor
option is selected. Let me know if any of these suggestions helped.
You can email me at ll...@bioinfor.com if you need further assistance.
Best Regards,
Lynette Lau
B@rtenB
Nov 25, 2009, 4:58:40 AM11/25/09
to PEAKS_forum
Hey all,
a friend told me that it is easier to combine all the msms spectra
from one spot with Biotools from bruker. You can combine all spectra
of one spot in one XML file. But now I don't find a way to import it
into peaks ..
only mzxml ..?
someone can help?
all the best,
Bart
On 10 nov, 15:25, Lynette <lynette.ys....@gmail.com> wrote:
> Dear Bart,
>
> Try checking your Bruker settings in PEAKS by going to preferences ->
> Instrument -> Bruker. Ensure that the Default Compass File Location is
> correct or if it is blank, browse to the correct location of
> CompassXport.exe. Also, make sure that the correct raw file convertor
> option is selected. Let me know if any of these suggestions helped.
>
> You can email me at l...@bioinfor.com if you need further assistance.
>
> - Tekst uit oorspronkelijk bericht weergeven -
a friend told me that it is easier to combine all the msms spectra
from one spot with Biotools from bruker. You can combine all spectra
of one spot in one XML file. But now I don't find a way to import it
into peaks ..
only mzxml ..?
someone can help?
all the best,
Bart
On 10 nov, 15:25, Lynette <lynette.ys....@gmail.com> wrote:
> Dear Bart,
>
> Try checking your Bruker settings in PEAKS by going to preferences ->
> Instrument -> Bruker. Ensure that the Default Compass File Location is
> correct or if it is blank, browse to the correct location of
> CompassXport.exe. Also, make sure that the correct raw file convertor
> option is selected. Let me know if any of these suggestions helped.
>
>
> Best Regards,
> Lynette Lau
>
> On Nov 10, 4:15 am, "B@rtenB" <boerjan.b...@gmail.com> wrote:
>
>
>
> > Dear all,
>
> > I can't import raw data from a Bruker ultraflex II tof/tof instrument
> > directly in to peaks.
>
> > I always have to create peaklists in flex analysis, and import those,
> > but this means two algorhytms processing the same data, and so some
> > can be lost + it takes me double the time to analyse my spectra.
>
> > all help is welcome,
>
> > best regards,
>
> > Bart- Tekst uit oorspronkelijk bericht niet weergeven -
> Best Regards,
> Lynette Lau
>
> On Nov 10, 4:15 am, "B@rtenB" <boerjan.b...@gmail.com> wrote:
>
>
>
> > Dear all,
>
> > I can't import raw data from a Bruker ultraflex II tof/tof instrument
> > directly in to peaks.
>
> > I always have to create peaklists in flex analysis, and import those,
> > but this means two algorhytms processing the same data, and so some
> > can be lost + it takes me double the time to analyse my spectra.
>
> > all help is welcome,
>
> > best regards,
>
>
> - Tekst uit oorspronkelijk bericht weergeven -
Lynette
Nov 25, 2009, 10:47:45 AM11/25/09
to PEAKS_forum
Dear Bart,
If possible can you send me the XML file (ll...@bioinfor.com) so that
we can try opening it here and see what is happening?
Best Regards,
Lynette
If possible can you send me the XML file (ll...@bioinfor.com) so that
we can try opening it here and see what is happening?
Best Regards,
Lynette
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