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3/21/11

issue with loading external search results for inChorus search

Hi Zeyu Sun, That shouldn't happen. One thing you need to make sure of is that you select the

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issue with loading external search results for inChorus search

Hi Zeyu Sun, That shouldn't happen. One thing you need to make sure of is that you select the

3/21/11

5/20/10

Error 396514 - is it a parse rule problem?

thank you! 2010/5/20 Dan <d...@bioinfor.com> Dear Rhodea, That symbol is what is causing the

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Error 396514 - is it a parse rule problem?

thank you! 2010/5/20 Dan <d...@bioinfor.com> Dear Rhodea, That symbol is what is causing the

5/20/10

andrew...@bbsrc.ac.uk

5/17/10

Quantification in Peaks 5.1

I have been using quantification via Workflow without any problem, but I cannot see how to apply

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Quantification in Peaks 5.1

I have been using quantification via Workflow without any problem, but I cannot see how to apply

5/17/10

Matt Padula, Dan2

5/11/10

Peaks 5.2 Database Validation problem

Hello Matt, My suggestion would be to change the parse rules when setting up the database. When

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Peaks 5.2 Database Validation problem

Hello Matt, My suggestion would be to change the parse rules when setting up the database. When

5/11/10

andrew...@bbsrc.ac.uk, Dan2

5/6/10

QScore in Peaks 5.1 Quantification

Hi Andrew, The QScore is a raw score. It is used to compare results within a single quantification

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QScore in Peaks 5.1 Quantification

Hi Andrew, The QScore is a raw score. It is used to compare results within a single quantification

5/6/10

andrew...@bbsrc.ac.uk, Dan2

4/19/10

Results filtering in Studio5.1

Not a problem, I can definitely help you out with the filters. Using the m/z filter as an example

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Results filtering in Studio5.1

Not a problem, I can definitely help you out with the filters. Using the m/z filter as an example

4/19/10

andrew...@bbsrc.ac.uk, Dan4

4/13/10

Default Configuration File Directory

Dear Andrew, That's a good idea to keep a copy of the Peaks config file in a safe place. I think

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Default Configuration File Directory

Dear Andrew, That's a good idea to keep a copy of the Peaks config file in a safe place. I think

4/13/10

B@rtenB, yorki...@hotmail.com2

12/22/09

Variable modifications greyed out

Bart, Unfortunately with PEAKS Studio 4.5 sp 2, they didn't offer variable modification support

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Variable modifications greyed out

Bart, Unfortunately with PEAKS Studio 4.5 sp 2, they didn't offer variable modification support

12/22/09

Denis Yuen, achim.nepaf2

12/1/09

Moderation Policy and New Members

This is very much appreciated - it will certainly make this dicussion forum more useful for its '

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Moderation Policy and New Members

This is very much appreciated - it will certainly make this dicussion forum more useful for its '

12/1/09

B@rtenB, Lynette4

11/25/09

Importing Bruker MALDI TOF/TOF data in peaks

Dear Bart, If possible can you send me the XML file (ll...@bioinfor.com) so that we can try opening it

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Importing Bruker MALDI TOF/TOF data in peaks

Dear Bart, If possible can you send me the XML file (ll...@bioinfor.com) so that we can try opening it

11/25/09

B@rtenB, … achim.nepaf9

11/19/09

Database search with multiple sequences

Hi Bart, If you contact me by email on info-at-nepaf-dot-com, I can send you an mgf (Mascot generic

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Database search with multiple sequences

Hi Bart, If you contact me by email on info-at-nepaf-dot-com, I can send you an mgf (Mascot generic

11/19/09

Matt Padula, Lynette5

6/22/09

Database parsing problems

And a little more info: "The resulting files are in FASTA format, with a header of the form:

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Database parsing problems

And a little more info: "The resulting files are in FASTA format, with a header of the form:

6/22/09

4/16/09

Reasons and reference for protein/peptide threshold value

Dear AP, Which version of Peaks are you using? Peaks 4.5 peptide scores are based on benchmark

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Reasons and reference for protein/peptide threshold value

Dear AP, Which version of Peaks are you using? Peaks 4.5 peptide scores are based on benchmark

4/16/09

3/18/09

Peaks 5.0 Problems starting in Chorus Search

Hi all, When I click the Inchorus search Icon in the toolbar or try to start it over the tools menu,

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Peaks 5.0 Problems starting in Chorus Search

Hi all, When I click the Inchorus search Icon in the toolbar or try to start it over the tools menu,

3/18/09

achim.nepaf, BrianM2

1/28/09

Hi Achim, While the PEAKS inChorus window for X!Tandem currently does not offer these advanced

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Hi Achim, While the PEAKS inChorus window for X!Tandem currently does not offer these advanced

1/28/09

8/26/08

Problems configuring Mascot to run in Peaks 4.5

Hi Ana, Glad to hear it!!! On Aug 26, 10:23 am, "Gabriela Pereira" <gabriela.pere...@

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Problems configuring Mascot to run in Peaks 4.5

Hi Ana, Glad to hear it!!! On Aug 26, 10:23 am, "Gabriela Pereira" <gabriela.pere...@

8/26/08

2/19/08

How to set up the parseing rule for custom protein database?

In the Fasta Database Configuration window, in the advanced options part set: Rule to parse accession

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How to set up the parseing rule for custom protein database?

In the Fasta Database Configuration window, in the advanced options part set: Rule to parse accession

2/19/08

9/12/07

Sneak Preview: new PEAKS Online

Hi All, We're in the process of releasing a new PEAKS Online. This will include some things that

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Sneak Preview: new PEAKS Online

Hi All, We're in the process of releasing a new PEAKS Online. This will include some things that

9/12/07

9/12/07

PEAKS Studio 4.5 SP1

Hi All, We've fixed the little bugs that some of you had pointed out in PEAKS Studio 4.5, and we

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PEAKS Studio 4.5 SP1

Hi All, We've fixed the little bugs that some of you had pointed out in PEAKS Studio 4.5, and we

9/12/07

8/28/07

Criteria for protein identification/quantification

Hi MR, I like to use a cut-off of "two high-scoring peptides". And you can set a filter for

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Criteria for protein identification/quantification

Hi MR, I like to use a cut-off of "two high-scoring peptides". And you can set a filter for

8/28/07

7/25/07

Hi I know a lot of you have your new PEAKS Studio... PEAKS Client and PEAKS Online new releases soon

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Hi I know a lot of you have your new PEAKS Studio... PEAKS Client and PEAKS Online new releases soon

7/25/07

6/28/07

Oh. I forgot to mention. We're releasing a new version. We previewed it at ASMS, full release

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Oh. I forgot to mention. We're releasing a new version. We previewed it at ASMS, full release

6/28/07

6/28/07

Documentation error - Filtering Trypsin and Keratin out from report

Hi Folks, Garrett asked me a question about filtering out Trypsin and Keratin from the reports, and I

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Documentation error - Filtering Trypsin and Keratin out from report

Hi Folks, Garrett asked me a question about filtering out Trypsin and Keratin from the reports, and I

6/28/07

5/11/07

Loading Masslynx (Waters) RAW data

Hi, A few of you have contacted me wrt loading RAW masslynx data. There's a new version of

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Loading Masslynx (Waters) RAW data

Hi, A few of you have contacted me wrt loading RAW masslynx data. There's a new version of

5/11/07

casswigmore, Peter M Yau2

5/9/07

Don't forget to register for PEAKS User's Meeting at ASMS - Sunday, June 3rd, 2007 at 3:00 PM.

Cassandra, Thanks for the invitation. Please sign me up for the User's meeting at 2007 ASMS

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Don't forget to register for PEAKS User's Meeting at ASMS - Sunday, June 3rd, 2007 at 3:00 PM.

Cassandra, Thanks for the invitation. Please sign me up for the User's meeting at 2007 ASMS

5/9/07

iainiai, Peter M Yau3

5/3/07

Non-standard amino acids

Hi Peter, Two things to discuss here: 1) If you submit a search via the web interface, the results

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Non-standard amino acids

Hi Peter, Two things to discuss here: 1) If you submit a search via the web interface, the results

5/3/07

1/12/07

PEAKS Online daemon

Hi Peter, Yes! You can use PEAKS Studio to do this. Open "Environment Preferences" and tell

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PEAKS Online daemon

Hi Peter, Yes! You can use PEAKS Studio to do this. Open "Environment Preferences" and tell

1/12/07

iainiai, Peter M Yau2

1/12/07

Re-installing, Re-installing, Re-installing

HI Iain, We have the PEAKS online running. I have been using it and it seems to be good. One thing I

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Re-installing, Re-installing, Re-installing

HI Iain, We have the PEAKS online running. I have been using it and it seems to be good. One thing I

1/12/07

12/18/06

PEAKS 4.2 minder

Hi All, As you know PEAKS Studio 4.2 has been out for a couple of weeks now. We're slowly but

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PEAKS 4.2 minder

Hi All, As you know PEAKS Studio 4.2 has been out for a couple of weeks now. We're slowly but

12/18/06

taus...@gmail.com, … Lapointe, David4

11/27/06

how could I recognize the signal peptides, N-and C-turminals of a protein sequece

SignalP is one program as well as Sigcleave from the EMBOSS suite (http://emboss.sourceforge.net/apps

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how could I recognize the signal peptides, N-and C-turminals of a protein sequece

SignalP is one program as well as Sigcleave from the EMBOSS suite (http://emboss.sourceforge.net/apps

11/27/06

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